1eed: Difference between revisions
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==X-ray crystallographic analysis of inhibition of endothiapepsin by cyclohexyl renin inhibitors== | ==X-ray crystallographic analysis of inhibition of endothiapepsin by cyclohexyl renin inhibitors== | ||
<StructureSection load='1eed' size='340' side='right' caption='[[1eed]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='1eed' size='340' side='right'caption='[[1eed]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[1eed]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[1eed]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryphonectria_parasitica Cryphonectria parasitica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EED OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EED FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0EO:(2S)-2-[[(3S,4S)-5-CYCLOHEXYL-4-[[(4S,5S)-5-[(2-METHYLPROPAN-2-YL)OXYCARBONYLAMINO]-4-OXIDANYL-6-PHENYL-HEXANOYL]AMINO]-3-OXIDANYL-PENTANOYL]AMINO]-4-METHYL-PENTANOIC+ACID'>0EO</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0EO:(2S)-2-[[(3S,4S)-5-CYCLOHEXYL-4-[[(4S,5S)-5-[(2-METHYLPROPAN-2-YL)OXYCARBONYLAMINO]-4-OXIDANYL-6-PHENYL-HEXANOYL]AMINO]-3-OXIDANYL-PENTANOYL]AMINO]-4-METHYL-PENTANOIC+ACID'>0EO</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eed FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eed OCA], [https://pdbe.org/1eed PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eed RCSB], [https://www.ebi.ac.uk/pdbsum/1eed PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eed ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/CARP_CRYPA CARP_CRYPA] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ee/1eed_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ee/1eed_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| Line 27: | Line 29: | ||
</div> | </div> | ||
<div class="pdbe-citations 1eed" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 1eed" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Pepsin|Pepsin]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Cryphonectria parasitica]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Blundell | [[Category: Blundell TL]] | ||
[[Category: Cooper | [[Category: Cooper JB]] | ||
[[Category: Frazao | [[Category: Frazao C]] | ||
Latest revision as of 09:33, 30 October 2024
X-ray crystallographic analysis of inhibition of endothiapepsin by cyclohexyl renin inhibitorsX-ray crystallographic analysis of inhibition of endothiapepsin by cyclohexyl renin inhibitors
Structural highlights
FunctionEvolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedThe crystal structures of endothiapepsin, a fungal aspartic proteinase (EC 3.4.23.6), cocrystallized with two oligopeptide renin inhibitors, PD125967 and PD125754, have been determined at 2.0-A resolution and refined to R-factors of 0.143 and 0.153, respectively. These inhibitors, which are of the hydroxyethylene and statine types, respectively, possess a cyclohexylalanine side chain at P1 and have interesting functionalities at the P3 position which, until now, have not been subjected to crystallographic analysis. PD125967 has a bis(1-naphthylmethyl)acetyl residue at P3, and PD125754 possesses a hydroxyethylene analogue of the P3-P2 peptide bond for proteolytic stability. The structures reveal that the S3 pocket accommodates one naphthyl ring with conformational changes of the Asp 77 and Asp 114 side chains, the other naphthyl group residing in the S4 region. The P3-P2 hydroxyethylene analogue of PD125754 forms a hydrogen bond with the NH of Thr 219, thereby making the same interaction with the enzyme as the equivalent peptide groups of all inhibitors studied so far. The absence of side chains at the P2 and P1' positions of this inhibitor allows water molecules to occupy the respective pockets in the complex. The relative potencies of PD125967 and PD125754 for endothiapepsin are consistent with the changes in solvent-accessible area which take place on inhibitor binding. X-ray crystallographic analysis of inhibition of endothiapepsin by cyclohexyl renin inhibitors.,Cooper J, Quail W, Frazao C, Foundling SI, Blundell TL, Humblet C, Lunney EA, Lowther WT, Dunn BM Biochemistry. 1992 Sep 8;31(35):8142-50. PMID:1525155[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences |
| ||||||||||||||||||