1dat: Difference between revisions

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 ==CUBIC CRYSTAL STRUCTURE RECOMBINANT HORSE L APOFERRITIN==
-<StructureSection load='1dat' size='340' side='right' caption='[[1dat]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+<StructureSection load='1dat' size='340' side='right'caption='[[1dat]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1dat]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DAT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DAT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1dat]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DAT FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CDNA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9796 Equus caballus])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dat OCA], [http://pdbe.org/1dat PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dat RCSB], [http://www.ebi.ac.uk/pdbsum/1dat PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1dat ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dat OCA], [https://pdbe.org/1dat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dat RCSB], [https://www.ebi.ac.uk/pdbsum/1dat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dat ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/FRIL_HORSE FRIL_HORSE]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
+[https://www.uniprot.org/uniprot/FRIL_HORSE FRIL_HORSE] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/1dat_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/1dat_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 20: / Line 20: @@
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dat ConSurf].
 <div style="clear:both"></div>
+==See Also==
+*[[Ferritin 3D structures|Ferritin 3D structures]]
 __TOC__
 </StructureSection>
 [[Category: Equus caballus]]
-[[Category: Crichton, R R]]
+[[Category: Large Structures]]
-[[Category: Estaintot, B Langlois D]]
+[[Category: Crichton RR]]
-[[Category: Gallois, B]]
+[[Category: Gallois B]]
-[[Category: Granier, T]]
+[[Category: Granier T]]
-[[Category: Roland, F]]
+[[Category: Langlois D'Estaintot B]]
-[[Category: Apoferritin]]
+[[Category: Roland F]]
-[[Category: Iron storage]]
-[[Category: Light chain]]