4yxc: Difference between revisions

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 ==Complex of FliM(SPOA)::FliN fusion protein and FliH(APAR)::T4lysozyme fusion protein==
-<StructureSection load='4yxc' size='340' side='right' caption='[[4yxc]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+<StructureSection load='4yxc' size='340' side='right'caption='[[4yxc]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4yxc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salty Salty] and [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_enteritidis_str._se30663 Salmonella enterica subsp. enterica serovar enteritidis str. se30663]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YXC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YXC FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4yxc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4], [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._SE30663 Salmonella enterica subsp. enterica serovar Enteritidis str. SE30663] and [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YXC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YXC FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fliH, SEE30663_21114 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=702978 Salmonella enterica subsp. enterica serovar Enteritidis str. SE30663]), fliN, flaN, motD, STM1977 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=99287 SALTY])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yxc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yxc OCA], [https://pdbe.org/4yxc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yxc RCSB], [https://www.ebi.ac.uk/pdbsum/4yxc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yxc ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yxc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yxc OCA], [http://pdbe.org/4yxc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yxc RCSB], [http://www.ebi.ac.uk/pdbsum/4yxc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yxc ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/FLIM_SALTY FLIM_SALTY]] FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation (By similarity).
+[https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
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 __TOC__
 </StructureSection>
-[[Category: Lysozyme]]
+[[Category: Escherichia virus T4]]
-[[Category: Salmonella enterica subsp. enterica serovar enteritidis str. se30663]]
+[[Category: Large Structures]]
-[[Category: Salty]]
+[[Category: Salmonella enterica subsp. enterica serovar Enteritidis str. SE30663]]
-[[Category: Notti, R Q]]
+[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-[[Category: Stebbins, C E]]
+[[Category: Notti RQ]]
-[[Category: Protein transport]]
+[[Category: Stebbins CE]]
-[[Category: Type iii secretion system]]