2af7: Difference between revisions

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-[[Image:2af7.gif|left|200px]]
- {{Structure
+==Crystal structure of the gamma-carboxymuconolactone decarboxylase from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium target TT747.==
-|PDB= 2af7 |SIZE=350|CAPTION= <scene name='initialview01'>2af7</scene>, resolution 2.81&Aring;
+<StructureSection load='2af7' size='340' side='right'caption='[[2af7]], [[Resolution|resolution]] 2.81&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+<table><tr><td colspan='2'>[[2af7]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AF7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AF7 FirstGlance]. <br>
-|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/4-carboxymuconolactone_decarboxylase 4-carboxymuconolactone decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.44 4.1.1.44] </span>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.81&#8491;</td></tr>
-|GENE= MTH234 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 Methanothermobacter thermautotrophicus])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0599 COG0599]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2af7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2af7 OCA], [https://pdbe.org/2af7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2af7 RCSB], [https://www.ebi.ac.uk/pdbsum/2af7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2af7 ProSAT], [https://www.topsan.org/Proteins/NESGC/2af7 TOPSAN]</span></td></tr>
-|RELATEDENTRY=[[1p8c|1P8C]], [[1vke|1VKE]]
+</table>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2af7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2af7 OCA], [http://www.ebi.ac.uk/pdbsum/2af7 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2af7 RCSB]</span>
+== Evolutionary Conservation ==
-}}
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-'''Crystal structure of the gamma-carboxymuconolactone decarboxylase from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium target TT747.'''
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/af/2af7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-==About this Structure==
+    <text>to colour the structure by Evolutionary Conservation</text>
-AF7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AF7 OCA].
+  </jmolCheckbox>
-[[Category: 4-carboxymuconolactone decarboxylase]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2af7 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Methanothermobacter thermautotrophicus]]
-[[Category: Single protein]]
+[[Category: Arrowsmith C]]
-[[Category: Arrowsmith, C.]]
+[[Category: Edwards A]]
-[[Category: Edwards, A.]]
+[[Category: Kuzin A]]
-[[Category: Kuzin, A.]]
+[[Category: Montelione GT]]
-[[Category: Montelione, G T.]]
+[[Category: Savchenko A]]
-[[Category: NESG, Northeast Structural Genomics Consortium.]]
+[[Category: Semesi A]]
-[[Category: Savchenko, A.]]
+[[Category: Skarina T]]
-[[Category: Semesi, A.]]
+[[Category: Tong L]]
-[[Category: Skarina, T.]]
+[[Category: Vorobiev SM]]
-[[Category: Tong, L.]]
-[[Category: Vorobiev, S M.]]
-[[Category: gamma-carboxymuconolactone decarboxylase]]
-[[Category: nesg]]
-[[Category: northeast structural genomics consortium]]
-[[Category: o26336_metth]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: structural genomic]]
-[[Category: tt747]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:51:49 2008''