3e5y: Difference between revisions

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OCA

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 ==Crystal structure of TrmH family RNA methyltransferase from Burkholderia pseudomallei==
-<StructureSection load='3e5y' size='340' side='right' caption='[[3e5y]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+<StructureSection load='3e5y' size='340' side='right'caption='[[3e5y]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3e5y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_pseudomallei_305 Burkholderia pseudomallei 305]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E5Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3E5Y FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3e5y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_pseudomallei_305 Burkholderia pseudomallei 305]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E5Y FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BURPS305_4843 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=425067 Burkholderia pseudomallei 305])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3e5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e5y OCA], [http://pdbe.org/3e5y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3e5y RCSB], [http://www.ebi.ac.uk/pdbsum/3e5y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3e5y ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e5y OCA], [https://pdbe.org/3e5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e5y RCSB], [https://www.ebi.ac.uk/pdbsum/3e5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e5y ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/A4LJP7_BURPE A4LJP7_BURPE]] Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.[HAMAP-Rule:MF_01885]
+[https://www.uniprot.org/uniprot/A0A0E1SBH3_BURPE A0A0E1SBH3_BURPE] Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.[HAMAP-Rule:MF_01885]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e5y_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e5/3e5y_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 19: / Line 19: @@
 </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e5y ConSurf].
 <div style="clear:both"></div>
+==See Also==
+*[[TRNA methyltransferase 3D structures|TRNA methyltransferase 3D structures]]
 __TOC__
 </StructureSection>
 [[Category: Burkholderia pseudomallei 305]]
-[[Category: Structural genomic]]
+[[Category: Large Structures]]
-[[Category: Decode]]
-[[Category: Methyltransferase]]
-[[Category: Protein knot]]
-[[Category: Rna methyltransferase]]
-[[Category: Ssgcid]]
-[[Category: Transferase]]