3bv8: Difference between revisions

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==Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus==
==Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus==
<StructureSection load='3bv8' size='340' side='right' caption='[[3bv8]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='3bv8' size='340' side='right'caption='[[3bv8]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3bv8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staam Staam]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3BV8 FirstGlance]. <br>
<table><tr><td colspan='2'>[[3bv8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_Mu50 Staphylococcus aureus subsp. aureus Mu50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BV8 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dapD, SAV1397 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=158878 STAAM])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bv8 OCA], [https://pdbe.org/3bv8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bv8 RCSB], [https://www.ebi.ac.uk/pdbsum/3bv8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bv8 ProSAT], [https://www.topsan.org/Proteins/MCSG/3bv8 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bv8 OCA], [http://pdbe.org/3bv8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3bv8 RCSB], [http://www.ebi.ac.uk/pdbsum/3bv8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3bv8 ProSAT], [http://www.topsan.org/Proteins/MCSG/3bv8 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/DAPH_STAAM DAPH_STAAM]] Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.[HAMAP-Rule:MF_01691]  
[https://www.uniprot.org/uniprot/DAPH_STAAM DAPH_STAAM] Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.[HAMAP-Rule:MF_01691]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bv8_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bv8_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Staam]]
[[Category: Large Structures]]
[[Category: Clancy, S]]
[[Category: Staphylococcus aureus subsp. aureus Mu50]]
[[Category: Cuff, M E]]
[[Category: Clancy S]]
[[Category: Duggan, E]]
[[Category: Cuff ME]]
[[Category: Joachimiak, A]]
[[Category: Duggan E]]
[[Category: Structural genomic]]
[[Category: Joachimiak A]]
[[Category: Acetyltransferase]]
[[Category: Mcsg]]
[[Category: Pfam08503]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]

Latest revision as of 11:50, 30 October 2024

Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureusCrystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus

Structural highlights

3bv8 is a 1 chain structure with sequence from Staphylococcus aureus subsp. aureus Mu50. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.75Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

DAPH_STAAM Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.[HAMAP-Rule:MF_01691]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3bv8, resolution 1.75Å

Drag the structure with the mouse to rotate

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OCA