2pcs: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
← Older edit
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:


==Crystal structure of conserved protein from Geobacillus kaustophilus==
==Crystal structure of conserved protein from Geobacillus kaustophilus==
<StructureSection load='2pcs' size='340' side='right' caption='[[2pcs]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='2pcs' size='340' side='right'caption='[[2pcs]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2pcs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PCS FirstGlance]. <br>
<table><tr><td colspan='2'>[[2pcs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PCS FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GKP20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=235909 GEOKA])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pcs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pcs OCA], [http://pdbe.org/2pcs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pcs RCSB], [http://www.ebi.ac.uk/pdbsum/2pcs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2pcs ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2pcs TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pcs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pcs OCA], [https://pdbe.org/2pcs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pcs RCSB], [https://www.ebi.ac.uk/pdbsum/2pcs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pcs ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pcs TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/Q5QL47_GEOKA Q5QL47_GEOKA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pcs_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pcs_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Geoka]]
[[Category: Geobacillus kaustophilus HTA426]]
[[Category: Almo, S C]]
[[Category: Large Structures]]
[[Category: Bain, K T]]
[[Category: Almo SC]]
[[Category: Bonanno, J B]]
[[Category: Bain KT]]
[[Category: Burley, S K]]
[[Category: Bonanno JB]]
[[Category: Gilmore, J]]
[[Category: Burley SK]]
[[Category: Structural genomic]]
[[Category: Gilmore J]]
[[Category: Romero, R]]
[[Category: Romero R]]
[[Category: Sauder, J M]]
[[Category: Sauder JM]]
[[Category: Smith, D]]
[[Category: Smith D]]
[[Category: Wasserman, S]]
[[Category: Wasserman S]]
[[Category: Wu, B]]
[[Category: Wu B]]
[[Category: Ligand binding]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]

Latest revision as of 12:09, 21 February 2024

Crystal structure of conserved protein from Geobacillus kaustophilusCrystal structure of conserved protein from Geobacillus kaustophilus

Structural highlights

2pcs is a 1 chain structure with sequence from Geobacillus kaustophilus HTA426. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.4Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q5QL47_GEOKA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2pcs, resolution 2.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=2pcs&oldid=4062369"