1j1s: Difference between revisions

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OCA

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 ==Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin==
-<StructureSection load='1j1s' size='340' side='right' caption='[[1j1s]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='1j1s' size='340' side='right'caption='[[1j1s]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1j1s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/American_pokeweed American pokeweed]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1S FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1j1s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytolacca_americana Phytolacca americana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1S FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMP:FORMYCIN-5-MONOPHOSPHATE'>FMP</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1j1q|1j1q]], [[1j1r|1j1r]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMP:FORMYCIN-5-MONOPHOSPHATE'>FMP</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1s OCA], [https://pdbe.org/1j1s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1s RCSB], [https://www.ebi.ac.uk/pdbsum/1j1s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1s ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1s OCA], [http://pdbe.org/1j1s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j1s RCSB], [http://www.ebi.ac.uk/pdbsum/1j1s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1s ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RIPS_PHYAM RIPS_PHYAM]] Inhibits viral infection of plants, and protein synthesis in vitro.
+[https://www.uniprot.org/uniprot/RIPS_PHYAM RIPS_PHYAM] Inhibits viral infection of plants, and protein synthesis in vitro.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1s_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1s_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
@@ Line 23: / Line 22: @@
 ==See Also==
-*[[Ribosome inactivating protein|Ribosome inactivating protein]]
+*[[Ribosome inactivating protein 3D structures|Ribosome inactivating protein 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: American pokeweed]]
+[[Category: Large Structures]]
-[[Category: RRNA N-glycosylase]]
+[[Category: Phytolacca americana]]
-[[Category: Fujii, H]]
+[[Category: Fujii H]]
-[[Category: Hidaka, A]]
+[[Category: Hidaka A]]
-[[Category: Honjo, E]]
+[[Category: Honjo E]]
-[[Category: Kurokawa, H]]
+[[Category: Kurokawa H]]
-[[Category: Mikami, B]]
+[[Category: Mikami B]]
-[[Category: Monzingo, A F]]
+[[Category: Monzingo AF]]
-[[Category: Motoshima, H]]
+[[Category: Motoshima H]]
-[[Category: Robertus, J D]]
+[[Category: Robertus JD]]
-[[Category: Sato, E]]
+[[Category: Sato E]]
-[[Category: Watanabe, K]]
+[[Category: Watanabe K]]
-[[Category: Hydrolase]]
-[[Category: N-glycosidase]]
-[[Category: Pokeweed antiviral protein]]
-[[Category: Ribosome-inactivating protein]]