6als: Difference between revisions

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New page: ==Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position== <StructureSection load='6als' size='340' side='right' capt...
 
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==Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position==
==Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position==
<StructureSection load='6als' size='340' side='right' caption='[[6als]], [[NMR_Ensembles_of_Models | 11 NMR models]]' scene=''>
<StructureSection load='6als' size='340' side='right'caption='[[6als]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[6als]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ALS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ALS FirstGlance]. <br>
<table><tr><td colspan='2'>[[6als]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ALS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ALS FirstGlance]. <br>
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=8OG:8-OXO-2-DEOXY-GUANOSINE-5-MONOPHOSPHATE'>8OG</scene>, <scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6als FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6als OCA], [http://pdbe.org/6als PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6als RCSB], [http://www.ebi.ac.uk/pdbsum/6als PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6als ProSAT]</span></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=8OG:8-OXO-2-DEOXY-GUANOSINE-5-MONOPHOSPHATE'>8OG</scene>, <scene name='pdbligand=DCZ:2-DEOXYCYTIDINE'>DCZ</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6als FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6als OCA], [https://pdbe.org/6als PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6als RCSB], [https://www.ebi.ac.uk/pdbsum/6als PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6als ProSAT]</span></td></tr>
</table>
</table>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bagryanskaya, E G]]
[[Category: Large Structures]]
[[Category: Endutkin, A V]]
[[Category: Synthetic construct]]
[[Category: Gruber, D R]]
[[Category: Bagryanskaya EG]]
[[Category: Shernyukov, A V]]
[[Category: Endutkin AV]]
[[Category: Smirnov, S L]]
[[Category: Gruber DR]]
[[Category: Zharkov, D O]]
[[Category: Shernyukov AV]]
[[Category: Dna]]
[[Category: Smirnov SL]]
[[Category: Dna adduct]]
[[Category: Zharkov DO]]
[[Category: Dna damage]]
[[Category: Drew-dickerson]]
[[Category: Lesion]]
[[Category: Modified dna]]
[[Category: Non-canonical]]
[[Category: Oxidized dna]]

Latest revision as of 10:29, 1 May 2024

Solution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th positionSolution structure of a DNA dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 4th position

Structural highlights

6als is a 2 chain structure with sequence from Synthetic construct. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT
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