5v6t: Difference between revisions

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 ==The Plexin D1 intracellular region in complex with GIPC1==
-<StructureSection load='5v6t' size='340' side='right' caption='[[5v6t]], [[Resolution|resolution]] 3.19&Aring;' scene=''>
+<StructureSection load='5v6t' size='340' side='right'caption='[[5v6t]], [[Resolution|resolution]] 3.19&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5v6t]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V6T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5V6T FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5v6t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5V6T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5V6T FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.189&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5v6b|5v6b]], [[5v6e|5v6e]], [[5v6h|5v6h]], [[5v6r|5v6r]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5v6t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v6t OCA], [http://pdbe.org/5v6t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5v6t RCSB], [http://www.ebi.ac.uk/pdbsum/5v6t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5v6t ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5v6t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5v6t OCA], [https://pdbe.org/5v6t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5v6t RCSB], [https://www.ebi.ac.uk/pdbsum/5v6t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5v6t ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PLXD1_MOUSE PLXD1_MOUSE]] Cell surface receptor for SEMA4A and for class 3 semaphorins, such as SEMA3A, SEMA3C and SEMA3E. Plays an important role in cell-cell signaling, and in regulating the migration of a wide spectrum of cell types. Regulates the migration of thymocytes in the medulla. Regulates endothelial cell migration. Plays an important role in ensuring the specificity of synapse formation. Mediates anti-angiogenic signaling in response to SEMA3E. Required for normal development of the heart and vasculature.<ref>PMID:15239958</ref> <ref>PMID:17318185</ref> <ref>PMID:18992737</ref> <ref>PMID:19027330</ref> <ref>PMID:19421194</ref> <ref>PMID:22179111</ref>  [[http://www.uniprot.org/uniprot/GIPC1_MOUSE GIPC1_MOUSE]] Inhibits endothelial cell migration (in vitro). May be involved in G protein-linked signaling (By similarity).
+[https://www.uniprot.org/uniprot/PLXD1_MOUSE PLXD1_MOUSE] Cell surface receptor for SEMA4A and for class 3 semaphorins, such as SEMA3A, SEMA3C and SEMA3E. Plays an important role in cell-cell signaling, and in regulating the migration of a wide spectrum of cell types. Regulates the migration of thymocytes in the medulla. Regulates endothelial cell migration. Plays an important role in ensuring the specificity of synapse formation. Mediates anti-angiogenic signaling in response to SEMA3E. Required for normal development of the heart and vasculature.<ref>PMID:15239958</ref> <ref>PMID:17318185</ref> <ref>PMID:18992737</ref> <ref>PMID:19027330</ref> <ref>PMID:19421194</ref> <ref>PMID:22179111</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
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 </div>
 <div class="pdbe-citations 5v6t" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Plexin 3D structures|Plexin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Shang, G]]
+[[Category: Large Structures]]
-[[Category: Zhang, X]]
+[[Category: Mus musculus]]
-[[Category: Protein binding]]
+[[Category: Shang G]]
+[[Category: Zhang X]]