1vdm: Difference between revisions

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[[Image:1vdm.gif|left|200px]]


{{Structure
==Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3==
|PDB= 1vdm |SIZE=350|CAPTION= <scene name='initialview01'>1vdm</scene>, resolution 2.50&Aring;
<StructureSection load='1vdm' size='340' side='right'caption='[[1vdm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND=  
<table><tr><td colspan='2'>[[1vdm]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDM FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
|GENE=  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdm OCA], [https://pdbe.org/1vdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdm RCSB], [https://www.ebi.ac.uk/pdbsum/1vdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdm ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdm TOPSAN]</span></td></tr>
|DOMAIN=
</table>
|RELATEDENTRY=
== Function ==
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdm OCA], [http://www.ebi.ac.uk/pdbsum/1vdm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1vdm RCSB]</span>
[https://www.uniprot.org/uniprot/O57827_PYRHO O57827_PYRHO]
}}
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdm_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdm ConSurf].
<div style="clear:both"></div>


'''Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3'''
==See Also==
 
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1VDM is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDM OCA].
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
[[Category: Single protein]]
[[Category: Kunishima N]]
[[Category: Kunishima, N.]]
[[Category: Sugahara M]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Sugahara, M.]]
[[Category: purine phosphoribosyltransferase]]
[[Category: pyrococcus horikoshii]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:22:55 2008''

Latest revision as of 03:02, 28 December 2023

Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3Crystal structure of purine phosphoribosyltransferase from Pyrococcus horikoshii Ot3

Structural highlights

1vdm is a 12 chain structure with sequence from Pyrococcus horikoshii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.5Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O57827_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1vdm, resolution 2.50Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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