4z9p: Difference between revisions

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 ==Crystal structure of Ebola virus nucleoprotein core domain at 1.8A resolution==
-<StructureSection load='4z9p' size='340' side='right' caption='[[4z9p]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
+<StructureSection load='4z9p' size='340' side='right'caption='[[4z9p]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4z9p]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z9P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4Z9P FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4z9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ebola_virus_-_Mayinga,_Zaire,_1976 Ebola virus - Mayinga, Zaire, 1976]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Z9P FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4z9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z9p OCA], [http://pdbe.org/4z9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4z9p RCSB], [http://www.ebi.ac.uk/pdbsum/4z9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4z9p ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.792&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4z9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z9p OCA], [https://pdbe.org/4z9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4z9p RCSB], [https://www.ebi.ac.uk/pdbsum/4z9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4z9p ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/NCAP_EBOZM NCAP_EBOZM]] Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid and serves as template for transcription and replication. During replication, encapsidation by NP is coupled to RNA synthesis and all replicative products are resistant to nucleases.
+[https://www.uniprot.org/uniprot/NCAP_EBOZM NCAP_EBOZM] Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid and serves as template for transcription and replication. During replication, encapsidation by NP is coupled to RNA synthesis and all replicative products are resistant to nucleases.
-<div style="background-color:#fffaf0;">
-== Publication Abstract from PubMed ==
-Ebola virus (EBOV) is a key member of Filoviridae family and causes severe human infectious diseases with high morbidity and mortality. As a typical negative-sense single-stranded RNA (-ssRNA) viruses, EBOV possess a nucleocapsid protein (NP) to facilitate genomic RNA encapsidation to form viral ribonucleoprotein complex (RNP) together with genome RNA and polymerase, which plays the most essential role in virus proliferation cycle. However, the mechanism of EBOV RNP formation remains unclear. In this work, we solved the high resolution structure of core domain of EBOV NP. The polypeptide of EBOV NP core domain (NPcore) possesses an N-lobe and C-lobe to clamp a RNA binding groove, presenting similarities with the structures of the other reported viral NPs encoded by the members from Mononegavirales order. Most strikingly, a hydrophobic pocket at the surface of the C-lobe is occupied by an alpha-helix of EBOV NPcore itself, which is highly conserved among filoviridae family. Combined with other biochemical and biophysical evidences, our results provides great potential for understanding the mechanism underlying EBOV RNP formation via the mobility of EBOV NP element and enables the development of antiviral therapies targeting EBOV RNP formation.
-Insight into the Ebola virus nucleocapsid assembly mechanism: crystal structure of Ebola virus nucleoprotein core domain at 1.8 A resolution.,Dong S, Yang P, Li G, Liu B, Wang W, Liu X, Xia B, Yang C, Lou Z, Guo Y, Rao Z Protein Cell. 2015 May;6(5):351-62. doi: 10.1007/s13238-015-0163-3. Epub 2015 Apr, 25. PMID:25910597<ref>PMID:25910597</ref>
+==See Also==
+*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
-From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-</div>
-<div class="pdbe-citations 4z9p" style="background-color:#fffaf0;"></div>
-== References ==
-<references/>
 __TOC__
 </StructureSection>
-[[Category: Dong, S S]]
+[[Category: Ebola virus - Mayinga, Zaire, 1976]]
-[[Category: Guo, Y]]
+[[Category: Large Structures]]
-[[Category: Li, G B]]
+[[Category: Dong SS]]
-[[Category: Liu, B C]]
+[[Category: Guo Y]]
-[[Category: Rao, Z H]]
+[[Category: Li GB]]
-[[Category: Yang, C]]
+[[Category: Liu BC]]
-[[Category: Yang, P]]
+[[Category: Rao ZH]]
-[[Category: Ebola]]
+[[Category: Yang C]]
-[[Category: Filoviridae]]
+[[Category: Yang P]]
-[[Category: Nucleoprotein]]
-[[Category: Rna binding protein]]
-[[Category: Viral protein]]