4yco: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe==
-<StructureSection load='4yco' size='340' side='right' caption='[[4yco]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+<StructureSection load='4yco' size='340' side='right'caption='[[4yco]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4yco]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4YCO FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4yco]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YCO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YCO FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4bfa|4bfa]], [[4bf9|4bf9]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4yco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yco OCA], [http://pdbe.org/4yco PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4yco RCSB], [http://www.ebi.ac.uk/pdbsum/4yco PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4yco ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yco FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yco OCA], [https://pdbe.org/4yco PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yco RCSB], [https://www.ebi.ac.uk/pdbsum/4yco PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yco ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DUSC_ECOLI DUSC_ECOLI]] Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
+[https://www.uniprot.org/uniprot/DUSC_ECOLI DUSC_ECOLI] Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 21: @@
 ==See Also==
-*[[TRNA|TRNA]]
+*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Antson, A A]]
+[[Category: Escherichia coli K-12]]
-[[Category: Aziz, N]]
+[[Category: Large Structures]]
-[[Category: Byrne, R T]]
+[[Category: Antson AA]]
-[[Category: Jenkins, H T]]
+[[Category: Aziz N]]
-[[Category: Kasatsky, P]]
+[[Category: Byrne RT]]
-[[Category: Konevega, A L]]
+[[Category: Jenkins HT]]
-[[Category: Koonin, E V]]
+[[Category: Kasatsky P]]
-[[Category: Peters, D T]]
+[[Category: Konevega AL]]
-[[Category: Rodnina, M V]]
+[[Category: Koonin EV]]
-[[Category: Stowell, J]]
+[[Category: Peters DT]]
-[[Category: Whelan, F]]
+[[Category: Rodnina MV]]
-[[Category: Oxidoreductase]]
+[[Category: Stowell J]]
-[[Category: Trna modification]]
+[[Category: Whelan F]]