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[[Image:1svd.gif|left|200px]]


{{Structure
==The structure of Halothiobacillus neapolitanus RuBisCo==
|PDB= 1svd |SIZE=350|CAPTION= <scene name='initialview01'>1svd</scene>, resolution 1.80&Aring;
<StructureSection load='1svd' size='340' side='right'caption='[[1svd]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
<table><tr><td colspan='2'>[[1svd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Halothiobacillus_neapolitanus Halothiobacillus neapolitanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SVD FirstGlance]. <br>
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39] </span>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
|GENE=
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
|DOMAIN=
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1svd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1svd OCA], [https://pdbe.org/1svd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1svd RCSB], [https://www.ebi.ac.uk/pdbsum/1svd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1svd ProSAT]</span></td></tr>
|RELATEDENTRY=
</table>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1svd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1svd OCA], [http://www.ebi.ac.uk/pdbsum/1svd PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1svd RCSB]</span>
== Function ==
}}
[https://www.uniprot.org/uniprot/RBL1_HALNC RBL1_HALNC] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1svd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1svd ConSurf].
<div style="clear:both"></div>


'''The structure of Halothiobacillus neapolitanus RuBisCo'''
==See Also==
 
*[[RuBisCO 3D structures|RuBisCO 3D structures]]
 
__TOC__
==About this Structure==
</StructureSection>
1SVD is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Halothiobacillus_neapolitanus Halothiobacillus neapolitanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVD OCA].
[[Category: Halothiobacillus neapolitanus]]
[[Category: Halothiobacillus neapolitanus]]
[[Category: Protein complex]]
[[Category: Large Structures]]
[[Category: Ribulose-bisphosphate carboxylase]]
[[Category: Cannon G]]
[[Category: Cannon, G.]]
[[Category: Kerfeld CA]]
[[Category: Kerfeld, C A.]]
[[Category: Pashkov I]]
[[Category: Pashkov, I.]]
[[Category: Sawaya MR]]
[[Category: Sawaya, M R.]]
[[Category: Tran K]]
[[Category: Tran, K.]]
[[Category: Williams E]]
[[Category: Williams, E.]]
[[Category: Yeates TO]]
[[Category: Yeates, T O.]]
[[Category: beta-alpha-barrel]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:47:28 2008''

Latest revision as of 09:20, 23 August 2023

The structure of Halothiobacillus neapolitanus RuBisCoThe structure of Halothiobacillus neapolitanus RuBisCo

Structural highlights

1svd is a 2 chain structure with sequence from Halothiobacillus neapolitanus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RBL1_HALNC RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1svd, resolution 1.80Å

Drag the structure with the mouse to rotate

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