5nao: Difference between revisions
New page: '''Unreleased structure''' The entry 5nao is ON HOLD Authors: Mineev, K.S., Goncharuk, S.A., Goncharuk, M.V., Arseniev, A.S. Description: NMR structure of TLR4 transmembrane domain (62... |
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==NMR structure of TLR4 transmembrane domain (624-657) in DPC micelles== | |||
<StructureSection load='5nao' size='340' side='right'caption='[[5nao]]' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[5nao]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NAO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5NAO FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5nao FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5nao OCA], [https://pdbe.org/5nao PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5nao RCSB], [https://www.ebi.ac.uk/pdbsum/5nao PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5nao ProSAT]</span></td></tr> | |||
</table> | |||
== Disease == | |||
[https://www.uniprot.org/uniprot/TLR4_HUMAN TLR4_HUMAN] Genetic variation in TLR4 is associated with age-related macular degeneration type 10 (ARMD10) [MIM:[https://omim.org/entry/611488 611488]. ARMD is a multifactorial eye disease and the most common cause of irreversible vision loss in the developed world. In most patients, the disease is manifest as ophthalmoscopically visible yellowish accumulations of protein and lipid that lie beneath the retinal pigment epithelium and within an elastin-containing structure known as Bruch membrane. | |||
== Function == | |||
[https://www.uniprot.org/uniprot/TLR4_HUMAN TLR4_HUMAN] Cooperates with LY96 and CD14 to mediate the innate immune response to bacterial lipopolysaccharide (LPS). Acts via MYD88, TIRAP and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Also involved in LPS-independent inflammatory responses triggered by Ni(2+). These responses require non-conserved histidines and are, therefore, species-specific.<ref>PMID:20711192</ref> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Toll-like receptors (TLRs) play a key role in the innate and adaptive immune systems. While a lot of structural data is available for the extracellular and cytoplasmic domains of TLRs, and a model of the dimeric full-length TLR3 receptor in the active state was build, the conformation of the transmembrane (TM) domain and juxtamembrane regions in TLR dimers is still unclear. In the present work, we study the transmembrane and juxtamembrane parts of human TLR4 receptor using solution NMR spectroscopy in a variety of membrane mimetics, including phospholipid bicelles. We show that the juxtamembrane hydrophobic region of TLR4 includes a part of long TM alpha-helix. We report the dimerization interface of the TM domain and claim that long TM domains with transmembrane charged aminoacids is a common feature of human toll-like receptors. This fact is analyzed from the viewpoint of protein activation mechanism, and a model of full-length TLR4 receptor in the dimeric state has been proposed. | |||
Spatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism.,Mineev KS, Goncharuk SA, Goncharuk MV, Volynsky PE, Novikova EV, Aresinev AS Sci Rep. 2017 Jul 31;7(1):6864. doi: 10.1038/s41598-017-07250-4. PMID:28761155<ref>PMID:28761155</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 5nao" style="background-color:#fffaf0;"></div> | ||
[[Category: Arseniev | |||
[[Category: Goncharuk | ==See Also== | ||
[[Category: Goncharuk | *[[Toll-like Receptor 3D structures|Toll-like Receptor 3D structures]] | ||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Homo sapiens]] | |||
[[Category: Large Structures]] | |||
[[Category: Arseniev AS]] | |||
[[Category: Goncharuk MV]] | |||
[[Category: Goncharuk SA]] | |||
[[Category: Mineev KS]] | |||