5t16: Difference between revisions

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 ==Crystal structure of yeast RNase III (Rnt1p) complexed with a non-hydrolyzable RNA substrate analog==
-<StructureSection load='5t16' size='340' side='right' caption='[[5t16]], [[Resolution|resolution]] 2.78&Aring;' scene=''>
+<StructureSection load='5t16' size='340' side='right'caption='[[5t16]], [[Resolution|resolution]] 2.78&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5t16]] is a 16 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T16 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5T16 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5t16]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5T16 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.783&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=73W:5-O-[(DITHIOPHOSPHONO)]CYTIDINE'>73W</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=73W:5-O-[(DITHIOPHOSPHONO)]CYTIDINE'>73W</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_III Ribonuclease III], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.26.3 3.1.26.3] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5t16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t16 OCA], [https://pdbe.org/5t16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5t16 RCSB], [https://www.ebi.ac.uk/pdbsum/5t16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5t16 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5t16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t16 OCA], [http://pdbe.org/5t16 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5t16 RCSB], [http://www.ebi.ac.uk/pdbsum/5t16 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5t16 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RNT1_YEAST RNT1_YEAST]] DsRNA-specific nuclease that cleaves eukaryotic pre-ribosomal RNA at the U3 snoRNP-dependent A0 site in the 5'-external transcribed spacer (ETS) and in the 3'-ETS. In vitro, cleaves synthetic 5'-ETS RNA A0 site in the absence of snoRNA or other factors. Has an essential growth function in addition to pre-rRNA processing.
+[https://www.uniprot.org/uniprot/RNT1_YEAST RNT1_YEAST] DsRNA-specific nuclease that cleaves eukaryotic pre-ribosomal RNA at the U3 snoRNP-dependent A0 site in the 5'-external transcribed spacer (ETS) and in the 3'-ETS. In vitro, cleaves synthetic 5'-ETS RNA A0 site in the absence of snoRNA or other factors. Has an essential growth function in addition to pre-rRNA processing.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 19: @@
 </div>
 <div class="pdbe-citations 5t16" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Ribonuclease III]]
+[[Category: Large Structures]]
-[[Category: Ji, X]]
+[[Category: Saccharomyces cerevisiae S288C]]
-[[Category: Song, H]]
+[[Category: Ji X]]
-[[Category: Hydrolase-rna complex]]
+[[Category: Song H]]
-[[Category: Rnase iii]]
-[[Category: Rnt1p]]
-[[Category: Substrate-loaded complex]]