5ubk: Difference between revisions

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-'''Unreleased structure'''
-The entry 5ubk is ON HOLD
+==Inactive S1A/N269D-cpPvdQ mutant in complex with the pyoverdine precursor PVDIq reveals a specific binding pocket for the D-Tyr of this substrate==
+<StructureSection load='5ubk' size='340' side='right'caption='[[5ubk]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
-Authors:
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5ubk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UBK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UBK FirstGlance]. <br>
-Description:
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=83M:N-[(1R)-1-{(6S)-6-[(2-AMINO-2-OXOETHYL)CARBAMOYL]-1,4,5,6-TETRAHYDROPYRIMIDIN-2-YL}-2-(4-HYDROXYPHENYL)ETHYL]-N~2~-TETRADECANOYL-L-GLUTAMINE'>83M</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ubl|5ubl]]</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pvdQ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acyl-homoserine-lactone_acylase Acyl-homoserine-lactone acylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.97 3.5.1.97] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ubk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ubk OCA], [http://pdbe.org/5ubk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ubk RCSB], [http://www.ebi.ac.uk/pdbsum/5ubk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ubk ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/PVDQ_PSEAE PVDQ_PSEAE]] Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length). Degrades 3-oxo-C12-HSL, one of the two main AHL signal molecules of P.aeruginosa, and thereby functions as a quorum quencher, inhibiting the las quorum-sensing system. Therefore, may enable P.aeruginosa to modulate its own quorum-sensing-dependent pathogenic potential. Also appears to be required for pyoverdin biosynthesis.<ref>PMID:16495538</ref> <ref>PMID:14532048</ref> <ref>PMID:12686626</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Acyl-homoserine-lactone acylase]]
+[[Category: Large Structures]]
+[[Category: Catlin, D]]
+[[Category: Clevenger, K]]
+[[Category: Fast, W]]
+[[Category: Liu, D]]
+[[Category: Mascarenhas, R]]
+[[Category: Wu, R]]
+[[Category: Cppvdq]]
+[[Category: Cppvdq s1a/269d]]
+[[Category: Hydrolase]]
+[[Category: Pyoverdine precursor]]
+[[Category: Substrate:mutant pvdq complex]]