3ii9: Difference between revisions

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OCA

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 ==Crystal structure of glutaryl-coa dehydrogenase from Burkholderia pseudomallei at 1.73 Angstrom==
-<StructureSection load='3ii9' size='340' side='right' caption='[[3ii9]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
+<StructureSection load='3ii9' size='340' side='right'caption='[[3ii9]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3ii9]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Burp1 Burp1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3II9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3II9 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3ii9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_pseudomallei_1710b Burkholderia pseudomallei 1710b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3II9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3II9 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3eom|3eom]], [[3d6b|3d6b]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BURPS1710b_3237 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=320372 BURP1])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ii9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ii9 OCA], [https://pdbe.org/3ii9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ii9 RCSB], [https://www.ebi.ac.uk/pdbsum/3ii9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ii9 ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutaryl-CoA_dehydrogenase_(ETF) Glutaryl-CoA dehydrogenase (ETF)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.3.8.6 1.3.8.6] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ii9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ii9 OCA], [http://pdbe.org/3ii9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ii9 RCSB], [http://www.ebi.ac.uk/pdbsum/3ii9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ii9 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q3JP94_BURP1 Q3JP94_BURP1]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ii/3ii9_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ii/3ii9_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 31: / Line 31: @@
 ==See Also==
+*[[Acyl-CoA dehydrogenase 3D structures|Acyl-CoA dehydrogenase 3D structures]]
 *[[Glutaryl-CoA dehydrogenase|Glutaryl-CoA dehydrogenase]]
 == References ==
@@ Line 36: / Line 37: @@
 __TOC__
 </StructureSection>
-[[Category: Burp1]]
+[[Category: Burkholderia pseudomallei 1710b]]
-[[Category: ATCG3D, Accelerated Technologies Center for Gene to 3D Structure]]
+[[Category: Large Structures]]
-[[Category: Du, W B]]
+[[Category: Du WB]]
-[[Category: Ismagilov, R F]]
+[[Category: Ismagilov RF]]
-[[Category: Li, L]]
+[[Category: Li L]]
-[[Category: Structural genomic]]
+[[Category: Staker B]]
-[[Category: Staker, B]]
-[[Category: Accelerated technologies center for gene to 3d structure]]
-[[Category: Atcg3d]]
-[[Category: Fad]]
-[[Category: Flavoprotein]]
-[[Category: Microfluidic]]
-[[Category: Optimization]]
-[[Category: Oxidoreductase]]
-[[Category: Protein crystallization]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Screening]]
-[[Category: Slipchip]]
-[[Category: Ssgcid]]