2skc: Difference between revisions

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 ==PYRIDOXAL PHOSPHORYLASE B IN COMPLEX WITH FLUOROPHOSPHATE, GLUCOSE AND INOSINE-5'-MONOPHOSPHATE==
-<StructureSection load='2skc' size='340' side='right' caption='[[2skc]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+<StructureSection load='2skc' size='340' side='right'caption='[[2skc]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2skc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/European_rabbit European rabbit]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1skc 1skc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2SKC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2SKC FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2skc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1skc 1skc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2SKC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2SKC FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FPO:FLUORO-PHOSPHITE+ION'>FPO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=IMP:INOSINIC+ACID'>IMP</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphorylase Phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.1 2.4.1.1] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FPO:FLUORO-PHOSPHITE+ION'>FPO</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=IMP:INOSINIC+ACID'>IMP</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2skc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2skc OCA], [http://pdbe.org/2skc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2skc RCSB], [http://www.ebi.ac.uk/pdbsum/2skc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2skc ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2skc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2skc OCA], [https://pdbe.org/2skc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2skc RCSB], [https://www.ebi.ac.uk/pdbsum/2skc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2skc ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PYGM_RABIT PYGM_RABIT]] Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
+[https://www.uniprot.org/uniprot/PYGM_RABIT PYGM_RABIT] Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sk/2skc_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sk/2skc_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 33: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: European rabbit]]
+[[Category: Large Structures]]
-[[Category: Phosphorylase]]
+[[Category: Oryctolagus cuniculus]]
-[[Category: Acharya, K R]]
+[[Category: Acharya KR]]
-[[Category: Johnson, L N]]
+[[Category: Johnson LN]]
-[[Category: Oikonomakos, N G]]
+[[Category: Oikonomakos NG]]
-[[Category: Tsitsanou, K E]]
+[[Category: Tsitsanou KE]]
-[[Category: Zographos, S E]]
+[[Category: Zographos SE]]
-[[Category: Allosteric enzyme]]
-[[Category: Glycogen metabolism]]
-[[Category: Glycogen phosphorylase]]
-[[Category: Pyridoxal phosphate]]
-[[Category: Transferase]]