4mdt: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Structure of LpxC bound to the reaction product UDP-(3-O-(R-3-hydroxymyristoyl))-glucosamine==
-<StructureSection load='4mdt' size='340' side='right' caption='[[4mdt]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
+<StructureSection load='4mdt' size='340' side='right'caption='[[4mdt]], [[Resolution|resolution]] 2.59&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4mdt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MDT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MDT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4mdt]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MDT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MDT FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=24G:URIDINE-5-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-GLUCOSAMINE'>24G</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.59&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lpxC, O3O_04310 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=24G:URIDINE-5-DIPHOSPHATE-3-O-(R-3-HYDROXYMYRISTOYL)-GLUCOSAMINE'>24G</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mdt OCA], [http://pdbe.org/4mdt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4mdt RCSB], [http://www.ebi.ac.uk/pdbsum/4mdt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4mdt ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mdt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mdt OCA], [https://pdbe.org/4mdt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mdt RCSB], [https://www.ebi.ac.uk/pdbsum/4mdt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mdt ProSAT]</span></td></tr>
 </table>
-== Function ==
-[[http://www.uniprot.org/uniprot/K0BGQ2_ECO1E K0BGQ2_ECO1E]] Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell (By similarity).[HAMAP-Rule:MF_00388][SAAS:SAAS015870_004_013136]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 26: / Line 24: @@
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Clayton, G M]]
+[[Category: Large Structures]]
-[[Category: Klein, D J]]
+[[Category: Clayton GM]]
-[[Category: Kornienko, M]]
+[[Category: Klein DJ]]
-[[Category: Lumb, K J]]
+[[Category: Kornienko M]]
-[[Category: Miesel, L]]
+[[Category: Lumb KJ]]
-[[Category: Patel, S B]]
+[[Category: Miesel L]]
-[[Category: Reid, J C]]
+[[Category: Patel SB]]
-[[Category: Rickert, K W]]
+[[Category: Reid JC]]
-[[Category: Sharma, S]]
+[[Category: Rickert KW]]
-[[Category: Singh, S B]]
+[[Category: Sharma S]]
-[[Category: Soisson, S M]]
+[[Category: Singh SB]]
-[[Category: Tummala, S]]
+[[Category: Soisson SM]]
-[[Category: Zugay-Murphy, J]]
+[[Category: Tummala S]]
-[[Category: Deacetylase]]
+[[Category: Zugay-Murphy J]]
-[[Category: Hydrolase]]