4lu1: Difference between revisions
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==Crystal structure of the uncharacterized Maf protein YceF from E. coli, mutant D69A== | ==Crystal structure of the uncharacterized Maf protein YceF from E. coli, mutant D69A== | ||
<StructureSection load='4lu1' size='340' side='right' caption='[[4lu1]], [[Resolution|resolution]] 1.92Å' scene=''> | <StructureSection load='4lu1' size='340' side='right'caption='[[4lu1]], [[Resolution|resolution]] 1.92Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4lu1]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[4lu1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4LU1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4LU1 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4lu1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4lu1 OCA], [https://pdbe.org/4lu1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4lu1 RCSB], [https://www.ebi.ac.uk/pdbsum/4lu1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4lu1 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 21: | Line 21: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Escherichia coli K-12]] | ||
[[Category: Brown | [[Category: Large Structures]] | ||
[[Category: Cui | [[Category: Brown G]] | ||
[[Category: Dong | [[Category: Cui H]] | ||
[[Category: Flick | [[Category: Dong A]] | ||
[[Category: Popovic | [[Category: Flick R]] | ||
[[Category: Popovic A]] | |||
[[Category: Savchenko | [[Category: Savchenko A]] | ||
[[Category: Tchigvintsev | [[Category: Tchigvintsev A]] | ||
[[Category: Xu | [[Category: Xu X]] | ||
[[Category: Yakunin | [[Category: Yakunin AF]] | ||
Latest revision as of 19:25, 20 September 2023
Crystal structure of the uncharacterized Maf protein YceF from E. coli, mutant D69ACrystal structure of the uncharacterized Maf protein YceF from E. coli, mutant D69A
Structural highlights
Publication Abstract from PubMedMaf (for multicopy associated filamentation) proteins represent a large family of conserved proteins implicated in cell division arrest but whose biochemical activity remains unknown. Here, we show that the prokaryotic and eukaryotic Maf proteins exhibit nucleotide pyrophosphatase activity against 5-methyl-UTP, pseudo-UTP, 5-methyl-CTP, and 7-methyl-GTP, which represent the most abundant modified bases in all organisms, as well as against canonical nucleotides dTTP, UTP, and CTP. Overexpression of the Maf protein YhdE in E. coli cells increased intracellular levels of dTMP and UMP, confirming that dTTP and UTP are the in vivo substrates of this protein. Crystal structures and site-directed mutagenesis of Maf proteins revealed the determinants of their activity and substrate specificity. Thus, pyrophosphatase activity of Maf proteins toward canonical and modified nucleotides might provide the molecular mechanism for a dual role of these proteins in cell division arrest and house cleaning. Biochemical and Structural Studies of Conserved Maf Proteins Revealed Nucleotide Pyrophosphatases with a Preference for Modified Nucleotides.,Tchigvintsev A, Tchigvintsev D, Flick R, Popovic A, Dong A, Xu X, Brown G, Lu W, Wu H, Cui H, Dombrowski L, Joo JC, Beloglazova N, Min J, Savchenko A, Caudy AA, Rabinowitz JD, Murzin AG, Yakunin AF Chem Biol. 2013 Oct 22. pii: S1074-5521(13)00347-5. doi:, 10.1016/j.chembiol.2013.09.011. PMID:24210219[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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