3m6p: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) in complex with actinonin==
-<StructureSection load='3m6p' size='340' side='right' caption='[[3m6p]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='3m6p' size='340' side='right'caption='[[3m6p]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3m6p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M6P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M6P FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3m6p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M6P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M6P FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3m6o|3m6o]], [[3m6q|3m6q]], [[3m6r|3m6r]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">def ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m6p OCA], [https://pdbe.org/3m6p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m6p RCSB], [https://www.ebi.ac.uk/pdbsum/3m6p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m6p ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m6p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m6p OCA], [http://pdbe.org/3m6p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m6p RCSB], [http://www.ebi.ac.uk/pdbsum/3m6p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m6p ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DEF1B_ARATH DEF1B_ARATH]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Has a preferred substrate specificity towards the photosystem II (PS II) D1 polypeptide.<ref>PMID:11060042</ref>
+[https://www.uniprot.org/uniprot/DEF1B_ARATH DEF1B_ARATH] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Has a preferred substrate specificity towards the photosystem II (PS II) D1 polypeptide.<ref>PMID:11060042</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 25: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Arath]]
-[[Category: Peptide deformylase]]
-[[Category: Fieulaine, S]]
-[[Category: Giglione, C]]
-[[Category: Meinnel, T]]
 [[Category: Arabidopsis thaliana]]
-[[Category: Hydrolase]]
+[[Category: Large Structures]]
-[[Category: Hydrolase-antibiotic complex]]
+[[Category: Fieulaine S]]
-[[Category: Induced-fit]]
+[[Category: Giglione C]]
-[[Category: Metal-binding]]
+[[Category: Meinnel T]]
-[[Category: Mitochondrion]]
-[[Category: N-terminal excision pathway]]
-[[Category: Nme]]
-[[Category: Pdf]]
-[[Category: Protein biosynthesis]]
-[[Category: Transit peptide]]