3vzo: Difference between revisions

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 ==Crystal structure of the Bacillus circulans endo-beta-(1,4)-xylanase (BcX) N35H mutant with Glu78 covalently bonded to 2-deoxy-2-fluoro-xylobiose==
-<StructureSection load='3vzo' size='340' side='right' caption='[[3vzo]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
+<StructureSection load='3vzo' size='340' side='right'caption='[[3vzo]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3vzo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_24 Atcc 24]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VZO FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3vzo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Niallia_circulans Niallia circulans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VZO FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=DFX:1,2-DEOXY-2-FLUORO-XYLOPYRANOSE'>DFX</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vzj|3vzj]], [[3vzk|3vzk]], [[3vzl|3vzl]], [[3vzm|3vzm]], [[3vzn|3vzn]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DFX:1,2-DEOXY-2-FLUORO-XYLOPYRANOSE'>DFX</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xlnA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1397 ATCC 24])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vzo OCA], [https://pdbe.org/3vzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vzo RCSB], [https://www.ebi.ac.uk/pdbsum/3vzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vzo ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vzo OCA], [http://pdbe.org/3vzo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vzo RCSB], [http://www.ebi.ac.uk/pdbsum/3vzo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vzo ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/XYNA_NIACI XYNA_NIACI]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 23: / Line 23: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 24]]
+[[Category: Large Structures]]
-[[Category: Endo-1,4-beta-xylanase]]
+[[Category: Niallia circulans]]
-[[Category: Angelo, I D]]
+[[Category: D'Angelo I]]
-[[Category: Ludwiczek, M L]]
+[[Category: Ludwiczek ML]]
-[[Category: McIntosh, L P]]
+[[Category: McIntosh LP]]
-[[Category: Nielsen, J E]]
+[[Category: Nielsen JE]]
-[[Category: Okon, M]]
+[[Category: Okon M]]
-[[Category: Strynadka, N C]]
+[[Category: Strynadka NC]]
-[[Category: Withers, S G]]
+[[Category: Withers SG]]
-[[Category: Yalloway, G N]]
+[[Category: Yalloway GN]]
-[[Category: Gh-11 glycoside hydrolase]]
-[[Category: Glycosyl-enzyme intermediate]]
-[[Category: Hydrolase-hydrolase inhibitor complex]]
-[[Category: Xylanase]]