1v8m: Difference between revisions

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OCA

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 ==Crystal structure analysis of ADP-ribose pyrophosphatase complexed with ADP-ribose and Gd==
-<StructureSection load='1v8m' size='340' side='right' caption='[[1v8m]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='1v8m' size='340' side='right'caption='[[1v8m]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1v8m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8M FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1v8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V8M FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=APR:ADENOSINE-5-DIPHOSPHORIBOSE'>APR</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1v8i|1v8i]], [[1v8l|1v8l]], [[1v8n|1v8n]], [[1v8r|1v8r]], [[1v8s|1v8s]], [[1v8t|1v8t]], [[1v8u|1v8u]], [[1v8v|1v8v]], [[1v8w|1v8w]], [[1v8y|1v8y]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=APR:ADENOSINE-5-DIPHOSPHORIBOSE'>APR</scene>, <scene name='pdbligand=GD:GADOLINIUM+ATOM'>GD</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/ADP-ribose_diphosphatase ADP-ribose diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.13 3.6.1.13] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8m OCA], [https://pdbe.org/1v8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v8m RCSB], [https://www.ebi.ac.uk/pdbsum/1v8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v8m ProSAT], [https://www.topsan.org/Proteins/RSGI/1v8m TOPSAN]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8m OCA], [http://pdbe.org/1v8m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v8m RCSB], [http://www.ebi.ac.uk/pdbsum/1v8m PDBsum], [http://www.topsan.org/Proteins/RSGI/1v8m TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q84CU3_THETH Q84CU3_THETH]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/1v8m_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/1v8m_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 29: / Line 31: @@
 ==See Also==
-*[[ADP-ribose pyrophosphatase|ADP-ribose pyrophosphatase]]
+*[[ADP-ribose pyrophosphatase 3D structures|ADP-ribose pyrophosphatase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
+[[Category: Large Structures]]
-[[Category: ADP-ribose diphosphatase]]
+[[Category: Thermus thermophilus]]
-[[Category: Inoue, Y]]
+[[Category: Inoue Y]]
-[[Category: Kuramitsu, S]]
+[[Category: Kuramitsu S]]
-[[Category: Masui, R]]
+[[Category: Masui R]]
-[[Category: Nakagawa, N]]
+[[Category: Nakagawa N]]
-[[Category: Ooga, T]]
+[[Category: Ooga T]]
-[[Category: Structural genomic]]
+[[Category: Shibata T]]
-[[Category: Shibata, T]]
+[[Category: Yokoyama S]]
-[[Category: Yokoyama, S]]
+[[Category: Yoshiba S]]
-[[Category: Yoshiba, S]]
-[[Category: Hydrolase]]
-[[Category: Loop-helix-loop]]
-[[Category: Mutt family]]
-[[Category: Nudix motif]]
-[[Category: Rsgi]]