2qy6: Difference between revisions

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 ==Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli O157:H7==
-<StructureSection load='2qy6' size='340' side='right' caption='[[2qy6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='2qy6' size='340' side='right'caption='[[2qy6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2qy6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Eco57 Eco57]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QY6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QY6 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2qy6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QY6 FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yfcK, Z3587, ECs3208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qy6 OCA], [http://pdbe.org/2qy6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2qy6 RCSB], [http://www.ebi.ac.uk/pdbsum/2qy6 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2qy6 TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qy6 OCA], [https://pdbe.org/2qy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qy6 RCSB], [https://www.ebi.ac.uk/pdbsum/2qy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qy6 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qy6 TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/MNMC_ECO57 MNMC_ECO57]] Catalyzes the last two steps in the biosynthesis of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34.[HAMAP-Rule:MF_01102]
+[https://www.uniprot.org/uniprot/MNMC_ECO57 MNMC_ECO57] Catalyzes the last two steps in the biosynthesis of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34.[HAMAP-Rule:MF_01102]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qy6_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qy6_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 20: / Line 21: @@
 __TOC__
 </StructureSection>
-[[Category: Eco57]]
+[[Category: Escherichia coli O157:H7]]
-[[Category: Almo, S C]]
+[[Category: Large Structures]]
-[[Category: Bain, K T]]
+[[Category: Almo SC]]
-[[Category: Bonanno, J B]]
+[[Category: Bain KT]]
-[[Category: Burley, S K]]
+[[Category: Bonanno JB]]
-[[Category: Dickey, M]]
+[[Category: Burley SK]]
-[[Category: Eberle, M]]
+[[Category: Dickey M]]
-[[Category: Structural genomic]]
+[[Category: Eberle M]]
-[[Category: Ozyurt, S]]
+[[Category: Ozyurt S]]
-[[Category: Sauder, J M]]
+[[Category: Sauder JM]]
-[[Category: Smith, D]]
+[[Category: Smith D]]
-[[Category: Wasserman, S]]
+[[Category: Wasserman S]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]