10mh: Difference between revisions

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 ==TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET==
-<StructureSection load='10mh' size='340' side='right' caption='[[10mh]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
+<StructureSection load='10mh' size='340' side='right'caption='[[10mh]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[10mh]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_x"_pritchett_and_stillman_1919 "bacillus x" pritchett and stillman 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=10MH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=10MH FirstGlance]. <br>
+<table><tr><td colspan='2'>[[10mh]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_haemolyticus Haemophilus haemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=10MH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=10MH FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=5NC:5-AZA-CYTIDINE-5MONOPHOSPHATE'>5NC</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=5NC:5-AZA-CYTIDINE-5MONOPHOSPHATE'>5NC</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_(cytosine-5-)-methyltransferase DNA (cytosine-5-)-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.37 2.1.1.37] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=10mh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=10mh OCA], [https://pdbe.org/10mh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=10mh RCSB], [https://www.ebi.ac.uk/pdbsum/10mh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=10mh ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=10mh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=10mh OCA], [http://pdbe.org/10mh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=10mh RCSB], [http://www.ebi.ac.uk/pdbsum/10mh PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/MTH1_HAEPH MTH1_HAEPH]] This methylase recognizes the double-stranded sequence GCGC, causes specific methylation on C-2 on both strands, and protects the DNA from cleavage by the HhaI endonuclease.
+[https://www.uniprot.org/uniprot/MTH1_HAEPH MTH1_HAEPH] This methylase recognizes the double-stranded sequence GCGC, causes specific methylation on C-2 on both strands, and protects the DNA from cleavage by the HhaI endonuclease.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/0m/10mh_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/0m/10mh_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 31: / Line 31: @@
 ==See Also==
-*[[HhaI DNA methyltransferase|HhaI DNA methyltransferase]]
+*[[DNA methyltransferase 3D structures|DNA methyltransferase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus x pritchett and stillman 1919]]
+[[Category: Haemophilus haemolyticus]]
-[[Category: Alvarez, E]]
+[[Category: Large Structures]]
-[[Category: Brank, A]]
+[[Category: Alvarez E]]
-[[Category: Cheng, X]]
+[[Category: Brank A]]
-[[Category: Christman, J K]]
+[[Category: Cheng X]]
-[[Category: Gara, M O]]
+[[Category: Christman JK]]
-[[Category: Goddard, A]]
+[[Category: Ford Junior H]]
-[[Category: Junior, H Ford]]
+[[Category: Goddard A]]
-[[Category: Marasco, C J]]
+[[Category: Marasco CJ]]
-[[Category: Marquez, V E]]
+[[Category: Marquez VE]]
-[[Category: Sheikhnejad, G]]
+[[Category: O'Gara M]]
-[[Category: Sufrin, J R]]
+[[Category: Sheikhnejad G]]
-[[Category: Methyltransferase]]
+[[Category: Sufrin JR]]
-[[Category: Restriction system]]
-[[Category: Transferase]]
-[[Category: Transferase-dna complex]]