2yx5: Difference between revisions

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 ==Crystal Structure of Methanocaldococcus jannaschii PurS, One of the Subunits of Formylglycinamide Ribonucleotide Amidotransferase in the Purine Biosynthetic Pathway==
-<StructureSection load='2yx5' size='340' side='right' caption='[[2yx5]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+<StructureSection load='2yx5' size='340' side='right'caption='[[2yx5]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2yx5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YX5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2YX5 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2yx5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YX5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YX5 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2yx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yx5 OCA], [http://pdbe.org/2yx5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2yx5 RCSB], [http://www.ebi.ac.uk/pdbsum/2yx5 PDBsum], [http://www.topsan.org/Proteins/RSGI/2yx5 TOPSAN]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yx5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yx5 OCA], [https://pdbe.org/2yx5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yx5 RCSB], [https://www.ebi.ac.uk/pdbsum/2yx5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yx5 ProSAT], [https://www.topsan.org/Proteins/RSGI/2yx5 TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PURS_METJA PURS_METJA]] Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.[HAMAP-Rule:MF_01926]
+[https://www.uniprot.org/uniprot/PURS_METJA PURS_METJA] Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.[HAMAP-Rule:MF_01926]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yx5_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/2yx5_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 19: / Line 21: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 43067]]
+[[Category: Large Structures]]
-[[Category: Agari, Y]]
+[[Category: Methanocaldococcus jannaschii]]
-[[Category: Baba, S]]
+[[Category: Agari Y]]
-[[Category: Chen, L Q]]
+[[Category: Baba S]]
-[[Category: Chrzas, J]]
+[[Category: Chen LQ]]
-[[Category: Fu, Z Q]]
+[[Category: Chrzas J]]
-[[Category: Kanagawa, M]]
+[[Category: Fu Z-Q]]
-[[Category: Kawai, G]]
+[[Category: Kanagawa M]]
-[[Category: Kuramitsu, S]]
+[[Category: Kawai G]]
-[[Category: Structural genomic]]
+[[Category: Kuramitsu S]]
-[[Category: Sampei, G]]
+[[Category: Sampei G]]
-[[Category: Wang, B C]]
+[[Category: Wang BC]]
-[[Category: Yokoyama, S]]
+[[Category: Yokoyama S]]
-[[Category: Anti parallel beta sheet]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Rsgi]]
-[[Category: Unknown function]]