5b16: Difference between revisions

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-'''Unreleased structure'''
-The entry 5b16 is ON HOLD
+==X-ray structure of DROSHA in complex with the C-terminal tail of DGCR8.==
+<StructureSection load='5b16' size='340' side='right'caption='[[5b16]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5b16]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B16 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B16 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b16 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b16 OCA], [https://pdbe.org/5b16 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b16 RCSB], [https://www.ebi.ac.uk/pdbsum/5b16 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b16 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RNC_HUMAN RNC_HUMAN] Ribonuclease III double-stranded (ds) RNA-specific endoribonuclease that is involved in the initial step of microRNA (miRNA) biogenesis. Component of the microprocessor complex that is required to process primary miRNA transcripts (pri-miRNAs) to release precursor miRNA (pre-miRNA) in the nucleus. Within the microprocessor complex, DROSHA cleaves the 3' and 5' strands of a stem-loop in pri-miRNAs (processing center 11 bp from the dsRNA-ssRNA junction) to release hairpin-shaped pre-miRNAs that are subsequently cut by the cytoplasmic DICER to generate mature miRNAs. Involved also in pre-rRNA processing. Cleaves double-strand RNA and does not cleave single-strand RNA. Involved in the formation of GW bodies.<ref>PMID:10948199</ref> <ref>PMID:14508493</ref> <ref>PMID:15589161</ref> <ref>PMID:15574589</ref> <ref>PMID:15531877</ref> <ref>PMID:15565168</ref> <ref>PMID:16751099</ref> <ref>PMID:16906129</ref> <ref>PMID:17159994</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+MicroRNA maturation is initiated by RNase III DROSHA that cleaves the stem loop of primary microRNA. DROSHA functions together with its cofactor DGCR8 in a heterotrimeric complex known as Microprocessor. Here, we report the X-ray structure of DROSHA in complex with the C-terminal helix of DGCR8. We find that DROSHA contains two DGCR8-binding sites, one on each RNase III domain (RIIID), which mediate the assembly of Microprocessor. The overall structure of DROSHA is surprisingly similar to that of Dicer despite no sequence homology apart from the C-terminal part, suggesting that DROSHA may have evolved from a Dicer homolog. DROSHA exhibits unique features, including non-canonical zinc-finger motifs, a long insertion in the first RIIID, and the kinked link between Connector helix and RIIID, which explains the 11-bp-measuring "ruler" activity of DROSHA. Our study implicates the evolutionary origin of DROSHA and elucidates the molecular basis of Microprocessor assembly and primary microRNA processing. VIDEO ABSTRACT.
-Authors: Kwon, S.C., Nguyen, T.A., Choi, Y.G., Jo, M.H., Hohng, S., Kim, V.N., Woo, J.S.
+Structure of Human DROSHA.,Kwon SC, Nguyen TA, Choi YG, Jo MH, Hohng S, Kim VN, Woo JS Cell. 2016 Jan 14;164(1-2):81-90. doi: 10.1016/j.cell.2015.12.019. Epub 2015 Dec , 31. PMID:26748718<ref>PMID:26748718</ref>
-Description: X-ray structure of DROSHA in complex with the C-terminal tail of DGCR8.
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-[[Category: Unreleased Structures]]
+</div>
-[[Category: Woo, J.S]]
+<div class="pdbe-citations 5b16" style="background-color:#fffaf0;"></div>
-[[Category: Choi, Y.G]]
+== References ==
-[[Category: Hohng, S]]
+<references/>
-[[Category: Jo, M.H]]
+__TOC__
-[[Category: Nguyen, T.A]]
+</StructureSection>
-[[Category: Kwon, S.C]]
+[[Category: Homo sapiens]]
-[[Category: Kim, V.N]]
+[[Category: Large Structures]]
+[[Category: Choi YG]]
+[[Category: Hohng S]]
+[[Category: Jo MH]]
+[[Category: Kim VN]]
+[[Category: Kwon SC]]
+[[Category: Nguyen TA]]
+[[Category: Woo JS]]