5dyf: Difference between revisions

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 ==The crystal structure of Aminopeptidase N in complex with N-benzyl-1,2-diaminoethylphosphonic acid==
-<StructureSection load='5dyf' size='340' side='right' caption='[[5dyf]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+<StructureSection load='5dyf' size='340' side='right'caption='[[5dyf]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5dyf]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DYF FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5dyf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_MC58 Neisseria meningitidis MC58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DYF FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5HR:[(1R)-1-AMINO-2-(BENZYLAMINO)ETHYL]PHOSPHONIC+ACID'>5HR</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.854&#8491;</td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5HR:[(1R)-1-AMINO-2-(BENZYLAMINO)ETHYL]PHOSPHONIC+ACID'>5HR</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4qir|4qir]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dyf OCA], [https://pdbe.org/5dyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dyf RCSB], [https://www.ebi.ac.uk/pdbsum/5dyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dyf ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Membrane_alanyl_aminopeptidase Membrane alanyl aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.2 3.4.11.2] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dyf OCA], [http://pdbe.org/5dyf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dyf RCSB], [http://www.ebi.ac.uk/pdbsum/5dyf PDBsum]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q9JYV4_NEIMB Q9JYV4_NEIMB]
+==See Also==
+*[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Membrane alanyl aminopeptidase]]
+[[Category: Large Structures]]
-[[Category: Berlicki, L]]
+[[Category: Neisseria meningitidis MC58]]
-[[Category: Joachimiak, A]]
+[[Category: Berlicki L]]
-[[Category: Structural genomic]]
+[[Category: Joachimiak A]]
-[[Category: Mucha, A]]
+[[Category: Mucha A]]
-[[Category: Nocek, B]]
+[[Category: Nocek B]]
-[[Category: Vassiliou, S]]
+[[Category: Vassiliou S]]
-[[Category: 2-diaminoethylphosphonic acid]]
-[[Category: Aminopeptidasen]]
-[[Category: Hydrolase-hydrolase inhibitor complex]]
-[[Category: Inhibitor complex]]
-[[Category: Mcsg]]
-[[Category: N-benzyl-1]]
-[[Category: Psi-biology]]