5dmh: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
New page: '''Unreleased structure''' The entry 5dmh is ON HOLD Authors: Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Cham...
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
'''Unreleased structure'''


The entry 5dmh is ON HOLD
==Crystal structure of a domain of unknown function (DUF1537) from Ralstonia eutropha H16 (H16_A1561), Target EFI-511666, complex with ADP.==
 
<StructureSection load='5dmh' size='340' side='right'caption='[[5dmh]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
Authors: Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)
== Structural highlights ==
 
<table><tr><td colspan='2'>[[5dmh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_necator_H16 Cupriavidus necator H16]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DMH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DMH FirstGlance]. <br>
Description: Crystal structure of a domain of unknown function (DUF1537) from Ralstonia eutropha H16 (H16_A1561), Target EFI-511666, complex with ADP.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
[[Category: Unreleased Structures]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Toro, R]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dmh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dmh OCA], [https://pdbe.org/5dmh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dmh RCSB], [https://www.ebi.ac.uk/pdbsum/5dmh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dmh ProSAT]</span></td></tr>
[[Category: Enzyme Function Initiative (Efi)]]
</table>
[[Category: Morisco, L.L]]
== Function ==
[[Category: Almo, S.C]]
[https://www.uniprot.org/uniprot/OTNK_CUPNH OTNK_CUPNH] Catalyzes the ATP-dependent phosphorylation of 3-oxo-tetronate to 3-oxo-tetronate 4-phosphate.<ref>PMID:27402745</ref>
[[Category: Attonito, J.D]]
== References ==
[[Category: Lafleur, J]]
<references/>
[[Category: Love, J]]
__TOC__
[[Category: Benach, J]]
</StructureSection>
[[Category: Wasserman, S.R]]
[[Category: Cupriavidus necator H16]]
[[Category: Vetting, M.W]]
[[Category: Large Structures]]
[[Category: Chowdhury, S]]
[[Category: Al Obaidi NF]]
[[Category: Al Obaidi, N.F]]
[[Category: Almo SC]]
[[Category: Gerlt, J.A]]
[[Category: Attonito JD]]
[[Category: Seidel, R.D]]
[[Category: Benach J]]
[[Category: Whalen, K.L]]
[[Category: Chamala S]]
[[Category: Chamala, S]]
[[Category: Chowdhury S]]
[[Category: Scott Glenn, A]]
[[Category: Gerlt JA]]
[[Category: Lafleur J]]
[[Category: Love J]]
[[Category: Morisco LL]]
[[Category: Scott Glenn A]]
[[Category: Seidel RD]]
[[Category: Toro R]]
[[Category: Vetting MW]]
[[Category: Wasserman SR]]
[[Category: Whalen KL]]

Latest revision as of 00:49, 29 June 2023

Crystal structure of a domain of unknown function (DUF1537) from Ralstonia eutropha H16 (H16_A1561), Target EFI-511666, complex with ADP.Crystal structure of a domain of unknown function (DUF1537) from Ralstonia eutropha H16 (H16_A1561), Target EFI-511666, complex with ADP.

Structural highlights

5dmh is a 2 chain structure with sequence from Cupriavidus necator H16. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

OTNK_CUPNH Catalyzes the ATP-dependent phosphorylation of 3-oxo-tetronate to 3-oxo-tetronate 4-phosphate.[1]

References

  1. ↑ Zhang X, Carter MS, Vetting MW, San Francisco B, Zhao S, Al-Obaidi NF, Solbiati JO, Thiaville JJ, de Crecy-Lagard V, Jacobson MP, Almo SC, Gerlt JA. Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars. Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4161-9. doi:, 10.1073/pnas.1605546113. Epub 2016 Jul 11. PMID:27402745 doi:http://dx.doi.org/10.1073/pnas.1605546113

5dmh, resolution 1.80Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
Retrieved from "https://proteopedia.openfox.io/wiki/index.php?title=5dmh&oldid=3797342"