2fdr: Difference between revisions

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-[[Image:2fdr.gif|left|200px]]
- {{Structure
+==Crystal Structure of Conserved Haloacid Dehalogenase-like Protein of Unknown Function ATU0790 from Agrobacterium tumefaciens str. C58==
-|PDB= 2fdr |SIZE=350|CAPTION= <scene name='initialview01'>2fdr</scene>, resolution 2.00&Aring;
+<StructureSection load='2fdr' size='340' side='right'caption='[[2fdr]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+<table><tr><td colspan='2'>[[2fdr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FDR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FDR FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0637 COG0637]</span>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fdr OCA], [https://pdbe.org/2fdr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fdr RCSB], [https://www.ebi.ac.uk/pdbsum/2fdr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fdr ProSAT], [https://www.topsan.org/Proteins/MCSG/2fdr TOPSAN]</span></td></tr>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fdr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fdr OCA], [http://www.ebi.ac.uk/pdbsum/2fdr PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2fdr RCSB]</span>
+</table>
-}}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-'''Crystal Structure of Conserved Haloacid Dehalogenase-like Protein of Unknown Function ATU0790 from Agrobacterium tumefaciens str. C58'''
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/2fdr_consurf.spt"</scriptWhenChecked>
-==About this Structure==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-FDR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FDR OCA].
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Agrobacterium tumefaciens]]
+  </jmolCheckbox>
-[[Category: Single protein]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fdr ConSurf].
-[[Category: Edwards, A.]]
+<div style="clear:both"></div>
-[[Category: Joachimiak, A.]]
+__TOC__
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+</StructureSection>
-[[Category: Nocek, B.]]
+[[Category: Agrobacterium fabrum str. C58]]
-[[Category: Savchenko, A.]]
+[[Category: Large Structures]]
-[[Category: Xu, X.]]
+[[Category: Edwards A]]
-[[Category: Zheng, H.]]
+[[Category: Joachimiak A]]
-[[Category: agrobacterium tumefacien]]
+[[Category: Nocek B]]
-[[Category: conserved hypothetical]]
+[[Category: Savchenko A]]
-[[Category: had-superfamily hydrolase]]
+[[Category: Xu X]]
-[[Category: mcsg]]
+[[Category: Zheng H]]
-[[Category: midwest center for structural genomic]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: putative b-phosphoglucomutase]]
-[[Category: sad]]
-[[Category: structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:24:31 2008''