2a6w: Difference between revisions

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OCA

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 ==Crystal structure of Emp46p carbohydrate recognition domain (CRD), metal-free form==
-<StructureSection load='2a6w' size='340' side='right' caption='[[2a6w]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+<StructureSection load='2a6w' size='340' side='right'caption='[[2a6w]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2a6w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A6W FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2a6w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A6W FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gv9|1gv9]], [[1r1z|1r1z]], [[2a6v|2a6v]], [[2a6x|2a6x]], [[2a6y|2a6y]], [[2a6z|2a6z]], [[2a70|2a70]], [[2a71|2a71]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a6w OCA], [http://pdbe.org/2a6w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a6w RCSB], [http://www.ebi.ac.uk/pdbsum/2a6w PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a6w OCA], [https://pdbe.org/2a6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a6w RCSB], [https://www.ebi.ac.uk/pdbsum/2a6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a6w ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/EMP46_YEAST EMP46_YEAST] Involved in the secretion of glycoproteins and in nucleus architecture and gene silencing.<ref>PMID:12134087</ref> <ref>PMID:12206772</ref> <ref>PMID:14627716</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a6/2a6w_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a6/2a6w_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a6w ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 29: / Line 32: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 18824]]
+[[Category: Large Structures]]
-[[Category: Kanoh, A]]
+[[Category: Saccharomyces cerevisiae]]
-[[Category: Kato, R]]
+[[Category: Kanoh A]]
-[[Category: Nakano, A]]
+[[Category: Kato R]]
-[[Category: Sato, K]]
+[[Category: Nakano A]]
-[[Category: Satoh, T]]
+[[Category: Sato K]]
-[[Category: Wakatsuki, S]]
+[[Category: Satoh T]]
-[[Category: Yamashita, K]]
+[[Category: Wakatsuki S]]
-[[Category: Beta sandwich]]
+[[Category: Yamashita K]]
-[[Category: Carbohydrate binding protein]]
-[[Category: Cargo receptor]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Structural genomic]]
-[[Category: Sugar binding protein]]