2exb: Difference between revisions
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==Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX== | ==Crystal structure of penicillin binding protein 4 (dacB) from Escherichia coli, complexed with FLOMOX== | ||
<StructureSection load='2exb' size='340' side='right' caption='[[2exb]], [[Resolution|resolution]] 1.75Å' scene=''> | <StructureSection load='2exb' size='340' side='right'caption='[[2exb]], [[Resolution|resolution]] 1.75Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2exb]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2exb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EXB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EXB FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FXM:2,2-DIMETHYLPROPANOYLOXYMETHYL+( | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FXM:2,2-DIMETHYLPROPANOYLOXYMETHYL+(2R)-5-(AMINOCARBONYLOXYMETHYL)-2-[(1R)-1-[[(Z)-2-(2-AZANYL-1,3-THIAZOL-4-YL)PENT-2-ENOYL]AMINO]-2-OXIDANYLIDENE-ETHYL]-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLATE'>FXM</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2exb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2exb OCA], [https://pdbe.org/2exb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2exb RCSB], [https://www.ebi.ac.uk/pdbsum/2exb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2exb ProSAT]</span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | == Function == | ||
[ | [https://www.uniprot.org/uniprot/DACB_ECOLI DACB_ECOLI] Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction.<ref>PMID:2046551</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/2exb_consurf.spt"</scriptWhenChecked> | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/2exb_consurf.spt"</scriptWhenChecked> | ||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2exb ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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==See Also== | ==See Also== | ||
*[[Penicillin-binding protein|Penicillin-binding protein]] | *[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Escherichia coli]] | ||
[[Category: Kishida | [[Category: Large Structures]] | ||
[[Category: Lloyd | [[Category: Kishida H]] | ||
[[Category: Park | [[Category: Lloyd A]] | ||
[[Category: Roper | [[Category: Park S-Y]] | ||
[[Category: Tame | [[Category: Roper DI]] | ||
[[Category: Unzai | [[Category: Tame JRH]] | ||
[[Category: Unzai S]] | |||