2k11: Difference between revisions

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 ==Solution structure of human pancreatic ribonuclease==
-<StructureSection load='2k11' size='340' side='right' caption='[[2k11]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2k11' size='340' side='right'caption='[[2k11]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2k11]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K11 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K11 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2k11]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K11 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K11 FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RNASE1, RIB1, RNS1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k11 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k11 OCA], [https://pdbe.org/2k11 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k11 RCSB], [https://www.ebi.ac.uk/pdbsum/2k11 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k11 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k11 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k11 OCA], [http://pdbe.org/2k11 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k11 RCSB], [http://www.ebi.ac.uk/pdbsum/2k11 PDBsum]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RNAS1_HUMAN RNAS1_HUMAN]] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:17350650</ref>
+[https://www.uniprot.org/uniprot/RNAS1_HUMAN RNAS1_HUMAN] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:17350650</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k1/2k11_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k1/2k11_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k11 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 30: / Line 30: @@
 ==See Also==
-*[[RNase A NMR|RNase A NMR]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-*[[Ribonuclease|Ribonuclease]]
-*[[Temp|Temp]]
 == References ==
 <references/>
@@ Line 38: / Line 36: @@
 </StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Pancreatic ribonuclease]]
+[[Category: Large Structures]]
-[[Category: Batta, G]]
+[[Category: Batta G]]
-[[Category: Bruix, M]]
+[[Category: Bruix M]]
-[[Category: Kover, K E]]
+[[Category: Kover KE]]
-[[Category: Laurents, D V]]
+[[Category: Laurents DV]]
-[[Category: Rico, M]]
+[[Category: Rico M]]
-[[Category: Santoro, J]]
+[[Category: Santoro J]]
-[[Category: Endonuclease]]
-[[Category: Glycoprotein]]
-[[Category: Hydrolase]]
-[[Category: Nuclease]]
-[[Category: Secreted]]