1giq: Difference between revisions

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OCA

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 ==Crystal Structure of the Enzymatic Componet of Iota-Toxin from Clostridium Perfringens with NADH==
-<StructureSection load='1giq' size='340' side='right' caption='[[1giq]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='1giq' size='340' side='right'caption='[[1giq]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1giq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GIQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GIQ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1giq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_perfringens Clostridium perfringens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GIQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GIQ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gir|1gir]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1giq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1giq OCA], [http://pdbe.org/1giq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1giq RCSB], [http://www.ebi.ac.uk/pdbsum/1giq PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1giq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1giq OCA], [https://pdbe.org/1giq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1giq RCSB], [https://www.ebi.ac.uk/pdbsum/1giq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1giq ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q46220_CLOPF Q46220_CLOPF]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gi/1giq_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gi/1giq_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1giq ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 31: / Line 34: @@
 </StructureSection>
 [[Category: Clostridium perfringens]]
-[[Category: Hisatsune, J]]
+[[Category: Large Structures]]
-[[Category: Itogawa, Y]]
+[[Category: Hisatsune J]]
-[[Category: Katunuma, N]]
+[[Category: Itogawa Y]]
-[[Category: Nagahama, M]]
+[[Category: Katunuma N]]
-[[Category: Nishimura, H]]
+[[Category: Nagahama M]]
-[[Category: Sakaguchi, Y]]
+[[Category: Nishimura H]]
-[[Category: Sakurai, J]]
+[[Category: Sakaguchi Y]]
-[[Category: Tsuge, H]]
+[[Category: Sakurai J]]
-[[Category: Enzymatic component]]
+[[Category: Tsuge H]]
-[[Category: Toxin]]