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==NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana==
==NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana==
<StructureSection load='1vdy' size='340' side='right' caption='[[1vdy]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
<StructureSection load='1vdy' size='340' side='right'caption='[[1vdy]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1vdy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VDY FirstGlance]. <br>
<table><tr><td colspan='2'>[[1vdy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDY FirstGlance]. <br>
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RIKEN CDNA RAFL09-17-B18 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdy OCA], [http://pdbe.org/1vdy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vdy RCSB], [http://www.ebi.ac.uk/pdbsum/1vdy PDBsum], [http://www.topsan.org/Proteins/RSGI/1vdy TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdy OCA], [https://pdbe.org/1vdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdy RCSB], [https://www.ebi.ac.uk/pdbsum/1vdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdy ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdy TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/MTV1_ARATH MTV1_ARATH] Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN). Promotes plant growth.<ref>PMID:23771894</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdy_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdy_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
   </jmolCheckbox>
   </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdy ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arath]]
[[Category: Arabidopsis thaliana]]
[[Category: Aoki, M]]
[[Category: Large Structures]]
[[Category: Guntert, P]]
[[Category: Aoki M]]
[[Category: Hirota, H]]
[[Category: Guntert P]]
[[Category: Inoue, M]]
[[Category: Hirota H]]
[[Category: Kigawa, T]]
[[Category: Inoue M]]
[[Category: Koshiba, S]]
[[Category: Kigawa T]]
[[Category: Lopez-Mendez, B]]
[[Category: Koshiba S]]
[[Category: Matsuda, T]]
[[Category: Lopez-Mendez B]]
[[Category: Osanai, T]]
[[Category: Matsuda T]]
[[Category: Pantoja-Uceda, D]]
[[Category: Osanai T]]
[[Category: Structural genomic]]
[[Category: Pantoja-Uceda D]]
[[Category: Seki, E]]
[[Category: Seki E]]
[[Category: Seki, M]]
[[Category: Seki M]]
[[Category: Shinozaki, K]]
[[Category: Shinozaki K]]
[[Category: Shirouzu, M]]
[[Category: Shirouzu M]]
[[Category: Tanaka, A]]
[[Category: Tanaka A]]
[[Category: Terada, T]]
[[Category: Terada T]]
[[Category: Tomizawa, T]]
[[Category: Tomizawa T]]
[[Category: Yabuki, T]]
[[Category: Yabuki T]]
[[Category: Yokoyama, S]]
[[Category: Yokoyama S]]
[[Category: Yoshida, M]]
[[Category: Yoshida M]]
[[Category: Hypothetical protein]]
[[Category: Rsgi]]
[[Category: Unknown function]]

Latest revision as of 03:02, 28 December 2023

NMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thalianaNMR Structure of the hypothetical ENTH-VHS domain At3g16270 from Arabidopsis thaliana

Structural highlights

1vdy is a 1 chain structure with sequence from Arabidopsis thaliana. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:Solution NMR
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MTV1_ARATH Mediates clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network (TGN). Promotes plant growth.[1]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

References

  1. ↑ Sauer M, Delgadillo MO, Zouhar J, Reynolds GD, Pennington JG, Jiang L, Liljegren SJ, Stierhof YD, De Jaeger G, Otegui MS, Bednarek SY, Rojo E. MTV1 and MTV4 encode plant-specific ENTH and ARF GAP proteins that mediate clathrin-dependent trafficking of vacuolar cargo from the trans-Golgi network. Plant Cell. 2013 Jun;25(6):2217-35. PMID:23771894 doi:10.1105/tpc.113.111724
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