1de3: Difference between revisions

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 ==SOLUTION STRUCTURE OF THE CYTOTOXIC RIBONUCLEASE ALPHA-SARCIN==
-<StructureSection load='1de3' size='340' side='right' caption='[[1de3]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='1de3' size='340' side='right'caption='[[1de3]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1de3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspgi Aspgi]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DE3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DE3 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1de3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_giganteus Aspergillus giganteus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DE3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DE3 FirstGlance]. <br>
-</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_endonuclease rRNA endonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.10 3.1.27.10] </span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1de3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1de3 OCA], [http://pdbe.org/1de3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1de3 RCSB], [http://www.ebi.ac.uk/pdbsum/1de3 PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1de3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1de3 OCA], [https://pdbe.org/1de3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1de3 RCSB], [https://www.ebi.ac.uk/pdbsum/1de3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1de3 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/RNAS_ASPGI RNAS_ASPGI]] Alpha-sarcin is specific for purines in both single- and double-stranded RNA. Its toxic action on eukaryotic cells is the result of cleavage of a single phosphodiester bond in the 60S subunit of ribosomes.
+[https://www.uniprot.org/uniprot/RNAS_ASPGI RNAS_ASPGI] Alpha-sarcin is specific for purines in both single- and double-stranded RNA. Its toxic action on eukaryotic cells is the result of cleavage of a single phosphodiester bond in the 60S subunit of ribosomes.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/1de3_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/1de3_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1de3 ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 29: / Line 30: @@
 ==See Also==
-*[[Ribonuclease|Ribonuclease]]
+*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-*[[Temp|Temp]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Aspgi]]
+[[Category: Aspergillus giganteus]]
-[[Category: RRNA endonuclease]]
+[[Category: Large Structures]]
-[[Category: Bruix, M]]
+[[Category: Bruix M]]
-[[Category: Campos-Olivas, R]]
+[[Category: Campos-Olivas R]]
-[[Category: Gavilanes, J G]]
+[[Category: Gavilanes JG]]
-[[Category: Lacadena, J]]
+[[Category: Lacadena J]]
-[[Category: Perez-Canadillas, J M]]
+[[Category: Martinez del Pozo A]]
-[[Category: Pozo, A Martinez del]]
+[[Category: Perez-Canadillas JM]]
-[[Category: Rico, M]]
+[[Category: Rico M]]
-[[Category: Santoro, J]]
+[[Category: Santoro J]]
-[[Category: Alpha-beta protein]]
-[[Category: Hydrolase]]