1l1s: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
 ==Structure of Protein of Unknown Function MTH1491 from Methanobacterium thermoautotrophicum==
-<StructureSection load='1l1s' size='340' side='right' caption='[[1l1s]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+<StructureSection load='1l1s' size='340' side='right'caption='[[1l1s]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1l1s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"methanobacterium_thermoautotrophicus"_(sic)_zeikus_and_wolfe_1972 "methanobacterium thermoautotrophicus" (sic) zeikus and wolfe 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L1S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L1S FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1l1s]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus Methanothermobacter thermautotrophicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L1S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L1S FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF1491 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=145262 "Methanobacterium thermoautotrophicus" (sic) Zeikus and Wolfe 1972])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l1s OCA], [http://pdbe.org/1l1s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1l1s RCSB], [http://www.ebi.ac.uk/pdbsum/1l1s PDBsum], [http://www.topsan.org/Proteins/MCSG/1l1s TOPSAN]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l1s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l1s OCA], [https://pdbe.org/1l1s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l1s RCSB], [https://www.ebi.ac.uk/pdbsum/1l1s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l1s ProSAT], [https://www.topsan.org/Proteins/MCSG/1l1s TOPSAN]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/O27535_METTH O27535_METTH]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l1/1l1s_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l1/1l1s_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l1s ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 30: / Line 33: @@
 __TOC__
 </StructureSection>
-[[Category: Arrowsmith, C H]]
+[[Category: Large Structures]]
-[[Category: Christendat, D]]
+[[Category: Methanothermobacter thermautotrophicus]]
-[[Category: Edwards, A M]]
+[[Category: Arrowsmith CH]]
-[[Category: Joachimiak, A]]
+[[Category: Christendat D]]
-[[Category: Kim, Y]]
+[[Category: Edwards AM]]
-[[Category: Kumar, P A]]
+[[Category: Joachimiak A]]
-[[Category: Structural genomic]]
+[[Category: Kim Y]]
-[[Category: Saridakis, V]]
+[[Category: Kumar PA]]
-[[Category: Semesi, A]]
+[[Category: Saridakis V]]
-[[Category: Xu, X]]
+[[Category: Semesi A]]
-[[Category: Hypothetical protein]]
+[[Category: Xu X]]
-[[Category: Mcsg]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Unknown function]]