1izo: Difference between revisions

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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 ==Cytochrome P450 BS beta Complexed with Fatty Acid==
-<StructureSection load='1izo' size='340' side='right' caption='[[1izo]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+<StructureSection load='1izo' size='340' side='right'caption='[[1izo]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1izo]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1IZO FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1izo]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1IZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1IZO FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PAM:PALMITOLEIC+ACID'>PAM</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1izo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1izo OCA], [http://pdbe.org/1izo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1izo RCSB], [http://www.ebi.ac.uk/pdbsum/1izo PDBsum], [http://www.topsan.org/Proteins/RSGI/1izo TOPSAN]</span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=PAM:PALMITOLEIC+ACID'>PAM</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1izo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1izo OCA], [https://pdbe.org/1izo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1izo RCSB], [https://www.ebi.ac.uk/pdbsum/1izo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1izo ProSAT], [https://www.topsan.org/Proteins/RSGI/1izo TOPSAN]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/CYPC_BACSU CYPC_BACSU]] Catalyzes the alpha- and beta-hydroxylation of myristic acid in the presence of hydrogen peroxide.
+[https://www.uniprot.org/uniprot/CYPC_BACSU CYPC_BACSU] Catalyzes the alpha- and beta-hydroxylation of myristic acid in the presence of hydrogen peroxide.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iz/1izo_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iz/1izo_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1izo ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 29: / Line 31: @@
 ==See Also==
-*[[Cytochrome P450|Cytochrome P450]]
+*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus globigii migula 1900]]
+[[Category: Bacillus subtilis]]
-[[Category: Adachi, S]]
+[[Category: Large Structures]]
-[[Category: Ichihara, K]]
+[[Category: Adachi S]]
-[[Category: Lee, D S]]
+[[Category: Ichihara K]]
-[[Category: Matsunaga, I]]
+[[Category: Lee DS]]
-[[Category: Ogura, H]]
+[[Category: Matsunaga I]]
-[[Category: Park, S Y]]
+[[Category: Ogura H]]
-[[Category: Structural genomic]]
+[[Category: Park SY]]
-[[Category: Shiro, Y]]
+[[Category: Shiro Y]]
-[[Category: Sugimoto, H]]
+[[Category: Sugimoto H]]
-[[Category: Yamada, A]]
+[[Category: Yamada A]]
-[[Category: Heme protein]]
-[[Category: Oxidoreductase]]
-[[Category: Protein-fatty acid complex]]
-[[Category: Rsgi]]