2ksm: Difference between revisions

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 ==Central B domain of Rv0899 from Mycobacterium tuberculosis==
-<StructureSection load='2ksm' size='340' side='right' caption='[[2ksm]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2ksm' size='340' side='right'caption='[[2ksm]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2ksm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KSM FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2ksm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KSM FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MT0922, MTCY31.27, Rv0899 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksm OCA], [http://pdbe.org/2ksm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ksm RCSB], [http://www.ebi.ac.uk/pdbsum/2ksm PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ksm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ksm OCA], [https://pdbe.org/2ksm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ksm RCSB], [https://www.ebi.ac.uk/pdbsum/2ksm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ksm ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/ARFA_MYCTU ARFA_MYCTU] Probably plays a role in ammonia secretion that neutralizes the medium at pH 5.5, although it does not play a direct role in ammonia transport. The OmpA-like domain (196-326) binds M.tuberculosis peptidoglycan. Overexpression in M.bovis or M.smegmatis gives channels with average conductance value of 1,600 +/- 100 pS, but this may not be physiologically relevant.<ref>PMID:12366842</ref> <ref>PMID:17573469</ref> <ref>PMID:21410778</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 17: / Line 20: @@
 ==See Also==
-*[[Porin|Porin]]
+*[[Porin 3D structures|Porin 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Kolodzik, A]]
+[[Category: Large Structures]]
-[[Category: Marassi, F M]]
+[[Category: Mycobacterium tuberculosis]]
-[[Category: Niederweis, M]]
+[[Category: Kolodzik A]]
-[[Category: Song, H]]
+[[Category: Marassi FM]]
-[[Category: Teriete, P]]
+[[Category: Niederweis M]]
-[[Category: Yao, Y]]
+[[Category: Song H]]
-[[Category: Yu, J]]
+[[Category: Teriete P]]
-[[Category: Bon domain]]
+[[Category: Yao Y]]
-[[Category: Membrane protein]]
+[[Category: Yu J]]
-[[Category: Ompatb]]
-[[Category: Transmembrane]]