1xi9: Difference between revisions

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-[[Image:1xi9.jpg|left|200px]]
- {{Structure
+==Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001==
-|PDB= 1xi9 |SIZE=350|CAPTION= <scene name='initialview01'>1xi9</scene>, resolution 2.33&Aring;
+<StructureSection load='1xi9' size='340' side='right'caption='[[1xi9]], [[Resolution|resolution]] 2.33&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=PLP:PYRIDOXAL-5&#39;-PHOSPHATE'>PLP</scene>
+<table><tr><td colspan='2'>[[1xi9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XI9 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.33&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xi9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xi9 OCA], [https://pdbe.org/1xi9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xi9 RCSB], [https://www.ebi.ac.uk/pdbsum/1xi9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xi9 ProSAT], [https://www.topsan.org/Proteins/SECSG/1xi9 TOPSAN]</span></td></tr>
+</table>
-'''Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001'''
+== Function ==
+[https://www.uniprot.org/uniprot/Q9P9M8_9EURY Q9P9M8_9EURY]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-XI9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XI9 OCA].
+Check<jmol>
-[[Category: Pyrococcus furiosus dsm 3638]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xi/1xi9_consurf.spt"</scriptWhenChecked>
-[[Category: Adams, M W.W.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Brereton, P S.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Chang, S H.]]
+  </jmolCheckbox>
-[[Category: Chen, L.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xi9 ConSurf].
-[[Category: II, F L.Poole.]]
+<div style="clear:both"></div>
-[[Category: III, W B.Arendall.]]
+__TOC__
-[[Category: Izumi, M.]]
+</StructureSection>
-[[Category: Jr., F E.Jenney.]]
+[[Category: Large Structures]]
-[[Category: Lee, D.]]
+[[Category: Pyrococcus furiosus DSM 3638]]
-[[Category: Lee, H S.]]
+[[Category: Adams MWW]]
-[[Category: Lin, D.]]
+[[Category: Arendall III WB]]
-[[Category: Liu, Z J.]]
+[[Category: Brereton PS]]
-[[Category: Richardson, D C.]]
+[[Category: Chang S-H]]
-[[Category: Richardson, J S.]]
+[[Category: Chen L]]
-[[Category: Rose, J P.]]
+[[Category: Izumi M]]
-[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+[[Category: Jenney Jr FE]]
-[[Category: Shah, A.]]
+[[Category: Lee D]]
-[[Category: Shah, C.]]
+[[Category: Lee H-S]]
-[[Category: Sugar, F J.]]
+[[Category: Lin D]]
-[[Category: Tempel, W.]]
+[[Category: Liu Z-J]]
-[[Category: Wang, B C.]]
+[[Category: Poole II FL]]
-[[Category: Zhou, W.]]
+[[Category: Richardson DC]]
-[[Category: PLP]]
+[[Category: Richardson JS]]
-[[Category: alanine aminotransferase]]
+[[Category: Rose JP]]
-[[Category: hyperthermophile]]
+[[Category: Shah A]]
-[[Category: protein structure initiative]]
+[[Category: Shah C]]
-[[Category: psi]]
+[[Category: Sugar FJ]]
-[[Category: pyrococcus furiosus]]
+[[Category: Tempel W]]
-[[Category: secsg]]
+[[Category: Wang B-C]]
-[[Category: southeast collaboratory for structural genomic]]
+[[Category: Zhou W]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 23 14:13:21 2008''