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[[Image:1rwt.gif|left|200px]]


{{Structure
==Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution==
|PDB= 1rwt |SIZE=350|CAPTION= <scene name='initialview01'>1rwt</scene>, resolution 2.72&Aring;
<StructureSection load='1rwt' size='340' side='right'caption='[[1rwt]], [[Resolution|resolution]] 2.72&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=LUT:(3R,3&#39;R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3&#39;-DIOL'>LUT</scene>, <scene name='pdbligand=XAT:(3S,5R,6S,3&#39;S,5&#39;R,6&#39;S)-5,6,5&#39;,6&#39;-DIEPOXY-5,6,5&#39;,6&#39;-+TETRAHYDRO-BETA,BETA-CAROTENE-3,3&#39;-DIOL'>XAT</scene>, <scene name='pdbligand=NEX:(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL'>NEX</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=CHL:CHLOROPHYLL+B'>CHL</scene> and <scene name='pdbligand=CLA:CHLOROPHYLL A'>CLA</scene>
<table><tr><td colspan='2'>[[1rwt]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea]. The November 2004 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Photosystem II''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2004_11 10.2210/rcsb_pdb/mom_2004_11]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RWT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RWT FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72&#8491;</td></tr>
|GENE=  
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNG:B-NONYLGLUCOSIDE'>BNG</scene>, <scene name='pdbligand=CHL:CHLOROPHYLL+B'>CHL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LUT:(3R,3R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3-DIOL'>LUT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NEX:(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL'>NEX</scene>, <scene name='pdbligand=XAT:(3S,5R,6S,3S,5R,6S)-5,6,5,6-DIEPOXY-5,6,5,6-+TETRAHYDRO-BETA,BETA-CAROTENE-3,3-DIOL'>XAT</scene></td></tr>
}}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rwt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rwt OCA], [https://pdbe.org/1rwt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rwt RCSB], [https://www.ebi.ac.uk/pdbsum/1rwt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rwt ProSAT]</span></td></tr>
 
</table>
'''Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution'''
== Function ==
 
[https://www.uniprot.org/uniprot/CB2A_SPIOL CB2A_SPIOL] The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
 
== Evolutionary Conservation ==
==Overview==
[[Image:Consurf_key_small.gif|200px|right]]
The major light-harvesting complex of photosystem II (LHC-II) serves as the principal solar energy collector in the photosynthesis of green plants and presumably also functions in photoprotection under high-light conditions. Here we report the first X-ray structure of LHC-II in icosahedral proteoliposome assembly at atomic detail. One asymmetric unit of a large R32 unit cell contains ten LHC-II monomers. The 14 chlorophylls (Chl) in each monomer can be unambiguously distinguished as eight Chla and six Chlb molecules. Assignment of the orientation of the transition dipole moment of each chlorophyll has been achieved. All Chlb are located around the interface between adjacent monomers, and together with Chla they are the basis for efficient light harvesting. Four carotenoid-binding sites per monomer have been observed. The xanthophyll-cycle carotenoid at the monomer-monomer interface may be involved in the non-radiative dissipation of excessive energy, one of the photoprotective strategies that have evolved in plants.
Check<jmol>
 
  <jmolCheckbox>
==About this Structure==
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rw/1rwt_consurf.spt"</scriptWhenChecked>
1RWT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Spinacia_oleracea Spinacia oleracea]. The following page contains interesting information on the relation of 1RWT with [[http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/pdb59_1.html Photosystem II]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RWT OCA].  
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==Reference==
  </jmolCheckbox>
Crystal structure of spinach major light-harvesting complex at 2.72 A resolution., Liu Z, Yan H, Wang K, Kuang T, Zhang J, Gui L, An X, Chang W, Nature. 2004 Mar 18;428(6980):287-92. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15029188 15029188]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rwt ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Photosystem II]]
[[Category: Photosystem II]]
[[Category: Single protein]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: Spinacia oleracea]]
[[Category: Spinacia oleracea]]
[[Category: An, X.]]
[[Category: An X]]
[[Category: Chang, W.]]
[[Category: Chang W]]
[[Category: Gui, L.]]
[[Category: Gui L]]
[[Category: Kuang, T.]]
[[Category: Kuang T]]
[[Category: Liu, Z.]]
[[Category: Liu Z]]
[[Category: Wang, K.]]
[[Category: Wang K]]
[[Category: Yan, H.]]
[[Category: Yan H]]
[[Category: Zhang, J.]]
[[Category: Zhang J]]
[[Category: BNG]]
[[Category: CHL]]
[[Category: CLA]]
[[Category: DGD]]
[[Category: LHG]]
[[Category: LUT]]
[[Category: NA]]
[[Category: NEX]]
[[Category: XAT]]
[[Category: light-harvesting complex]]
[[Category: membrane protein]]
[[Category: plant]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 23 13:32:02 2008''

Latest revision as of 16:29, 13 March 2024

Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom ResolutionCrystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution

Structural highlights

1rwt is a 10 chain structure with sequence from Spinacia oleracea. The November 2004 RCSB PDB Molecule of the Month feature on Photosystem II by David S. Goodsell is 10.2210/rcsb_pdb/mom_2004_11. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.72Å
Ligands:, , , , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

CB2A_SPIOL The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

1rwt, resolution 2.72Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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