1q9o: Difference between revisions

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OCA

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 ==S45-18 Fab Unliganded==
-<StructureSection load='1q9o' size='340' side='right' caption='[[1q9o]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
+<StructureSection load='1q9o' size='340' side='right'caption='[[1q9o]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1q9o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q9O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q9O FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1q9o]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q9O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q9O FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1q9k|1q9k]], [[1q9l|1q9l]], [[1q9q|1q9q]], [[1q9r|1q9r]], [[1q9t|1q9t]], [[1q9v|1q9v]], [[1q9w|1q9w]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q9o OCA], [http://pdbe.org/1q9o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q9o RCSB], [http://www.ebi.ac.uk/pdbsum/1q9o PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q9o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q9o OCA], [https://pdbe.org/1q9o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q9o RCSB], [https://www.ebi.ac.uk/pdbsum/1q9o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q9o ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/I6L985_MOUSE I6L985_MOUSE]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q9/1q9o_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q9/1q9o_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q9o ConSurf].
 <div style="clear:both"></div>
 <div style="background-color:#fffaf0;">
@@ Line 28: / Line 31: @@
 ==See Also==
-*[[Antibody|Antibody]]
+*[[Antibody 3D structures|Antibody 3D structures]]
+*[[Sandbox 20009|Sandbox 20009]]
+*[[3D structures of non-human antibody|3D structures of non-human antibody]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
+[[Category: Large Structures]]
 [[Category: Mus musculus]]
-[[Category: Brade, H]]
+[[Category: Brade H]]
-[[Category: Brade, L]]
+[[Category: Brade L]]
-[[Category: Evans, S V]]
+[[Category: Evans SV]]
-[[Category: Kosma, P]]
+[[Category: Kosma P]]
-[[Category: MacKenzie, C R]]
+[[Category: MacKenzie CR]]
-[[Category: Nguyen, H P]]
+[[Category: Nguyen HP]]
-[[Category: Seto, N O]]
+[[Category: Seto NO]]
-[[Category: Anti-carbohydrate]]
-[[Category: Anti-lp]]
-[[Category: Antibody]]
-[[Category: Antigen-binding fragment]]
-[[Category: Fab]]
-[[Category: Immune system]]
-[[Category: Immunoglobulin]]