2ggs: Difference between revisions

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OCA

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 ==crystal structure of hypothetical dTDP-4-dehydrorhamnose reductase from sulfolobus tokodaii==
-<StructureSection load='2ggs' size='340' side='right' caption='[[2ggs]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+<StructureSection load='2ggs' size='340' side='right'caption='[[2ggs]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2ggs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dsm_16993 Dsm 16993]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGS FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2ggs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GGS FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dTDP-4-dehydrorhamnose_reductase dTDP-4-dehydrorhamnose reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.133 1.1.1.133] </span></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ggs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ggs OCA], [http://pdbe.org/2ggs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ggs RCSB], [http://www.ebi.ac.uk/pdbsum/2ggs PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ggs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ggs OCA], [https://pdbe.org/2ggs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ggs RCSB], [https://www.ebi.ac.uk/pdbsum/2ggs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ggs ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q96Z61_SULTO Q96Z61_SULTO]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/2ggs_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/2ggs_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ggs ConSurf].
 <div style="clear:both"></div>
 __TOC__
 </StructureSection>
-[[Category: Dsm 16993]]
+[[Category: Large Structures]]
-[[Category: DTDP-4-dehydrorhamnose reductase]]
+[[Category: Sulfurisphaera tokodaii]]
-[[Category: Kuramitsu, S]]
+[[Category: Kuramitsu S]]
-[[Category: Masui, R]]
+[[Category: Masui R]]
-[[Category: Mizushima, T]]
+[[Category: Mizushima T]]
-[[Category: Rajakannan, V]]
+[[Category: Rajakannan V]]
-[[Category: Suzuki, A]]
+[[Category: Suzuki A]]
-[[Category: Yamane, T]]
+[[Category: Yamane T]]
-[[Category: Alpha]]
-[[Category: Beta]]
-[[Category: Oxidoreductase]]