3ch0: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:3ch0.jpg|left|200px]]
- {{Structure
+==Crystal structure of glycerophosphoryl diester phosphodiesterase (YP_677622.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution==
-|PDB= 3ch0 |SIZE=350|CAPTION= <scene name='initialview01'>3ch0</scene>, resolution 1.500&Aring;
+<StructureSection load='3ch0' size='340' side='right'caption='[[3ch0]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-|SITE= <scene name='pdbsite=AC1:Cit+Binding+Site+For+Residue+A+272'>AC1</scene>, <scene name='pdbsite=AC2:Edo+Binding+Site+For+Residue+A+273'>AC2</scene>, <scene name='pdbsite=AC3:Edo+Binding+Site+For+Residue+A+274'>AC3</scene>, <scene name='pdbsite=AC4:Edo+Binding+Site+For+Residue+A+275'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+A+276'>AC5</scene>, <scene name='pdbsite=AC6:Edo+Binding+Site+For+Residue+A+277'>AC6</scene>, <scene name='pdbsite=AC7:Edo+Binding+Site+For+Residue+A+278'>AC7</scene>, <scene name='pdbsite=AC8:Edo+Binding+Site+For+Residue+A+279'>AC8</scene>, <scene name='pdbsite=AC9:Edo+Binding+Site+For+Residue+A+280'>AC9</scene>, <scene name='pdbsite=BC1:Edo+Binding+Site+For+Residue+A+281'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+A+282'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+A+283'>BC3</scene>, <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+A+284'>BC4</scene>, <scene name='pdbsite=BC5:Edo+Binding+Site+For+Residue+A+285'>BC5</scene>, <scene name='pdbsite=BC6:Edo+Binding+Site+For+Residue+A+286'>BC6</scene>, <scene name='pdbsite=BC7:Edo+Binding+Site+For+Residue+A+287'>BC7</scene>, <scene name='pdbsite=BC8:Edo+Binding+Site+For+Residue+A+288'>BC8</scene> and <scene name='pdbsite=BC9:Gol+Binding+Site+For+Residue+A+289'>BC9</scene>
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+<table><tr><td colspan='2'>[[3ch0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_ATCC_33406 Cytophaga hutchinsonii ATCC 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CH0 FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-|GENE= YP_677622.1, ugpQ, CHU_1005 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269798 Cytophaga hutchinsonii ATCC 33406])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ch0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ch0 OCA], [https://pdbe.org/3ch0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ch0 RCSB], [https://www.ebi.ac.uk/pdbsum/3ch0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ch0 ProSAT], [https://www.topsan.org/Proteins/JCSG/3ch0 TOPSAN]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ch/3ch0_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ch0 ConSurf].
+<div style="clear:both"></div>
-'''Crystal structure of glycerophosphoryl diester phosphodiesterase (YP_677622.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution'''
+==See Also==
+*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
+__TOC__
-==About this Structure==
+</StructureSection>
-CH0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_atcc_33406 Cytophaga hutchinsonii atcc 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CH0 OCA].
+[[Category: Cytophaga hutchinsonii ATCC 33406]]
-[[Category: Cytophaga hutchinsonii atcc 33406]]
+[[Category: Large Structures]]
-[[Category: Glycerophosphodiester phosphodiesterase]]
-[[Category: Single protein]]
-[[Category: JCSG, Joint Center for Structural Genomics.]]
-[[Category: CIT]]
-[[Category: EDO]]
-[[Category: GOL]]
-[[Category: glycerophosphoryl diester phosphodiesterase]]
-[[Category: hydrolase]]
-[[Category: jcsg]]
-[[Category: joint center for structural genomic]]
-[[Category: protein structure initiative]]
-[[Category: psi-2]]
-[[Category: structural genomic]]
-[[Category: yp_677622 1]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:04:03 2008''