2apw: Difference between revisions

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 ==Crystal Structure of the G17E/A52V/S54N/K66E/E80V/L81S/T87S/G96V variant of the murine T cell receptor V beta 8.2 domain==
-<StructureSection load='2apw' size='340' side='right' caption='[[2apw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='2apw' size='340' side='right'caption='[[2apw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2apw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2APW FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2apw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2APW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2APW FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2apb|2apb]], [[2apf|2apf]], [[2apt|2apt]], [[2apv|2apv]], [[2apx|2apx]], [[2aq1|2aq1]], [[2aq2|2aq2]], [[2aq3|2aq3]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLA:MALONIC+ACID'>MLA</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2apw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2apw RCSB], [http://www.ebi.ac.uk/pdbsum/2apw PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2apw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2apw OCA], [https://pdbe.org/2apw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2apw RCSB], [https://www.ebi.ac.uk/pdbsum/2apw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2apw ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A2NAI0_RAT A2NAI0_RAT]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2apw_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2apw_consurf.spt"</scriptWhenChecked>
-     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2apw ConSurf].
 <div style="clear:both"></div>
 ==See Also==
-*[[T-cell receptor|T-cell receptor]]
+*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Buffalo rat]]
+[[Category: Large Structures]]
-[[Category: Cho, S]]
+[[Category: Rattus norvegicus]]
-[[Category: Guan, R]]
+[[Category: Cho S]]
-[[Category: Kerzic, M C]]
+[[Category: Guan R]]
-[[Category: Kieke, M C]]
+[[Category: Kerzic MC]]
-[[Category: Kranz, D M]]
+[[Category: Kieke MC]]
-[[Category: Mariuzza, R A]]
+[[Category: Kranz DM]]
-[[Category: Sundberg, E J]]
+[[Category: Mariuzza RA]]
-[[Category: Swaminathan, C P]]
+[[Category: Sundberg EJ]]
-[[Category: Yang, J]]
+[[Category: Swaminathan CP]]
-[[Category: Immune system]]
+[[Category: Yang J]]
-[[Category: The murine t cell receptor v beta 8 2 domain]]