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Class C β-lactamases are a subcategory of β-lactamase enzymes. These enzymes are produced by some bacteria and result in their resistance to a variety of β-lactam antibiotics. β-lactam antibiotics are classified based on their chemical structure which contains a four membered, amide containing ring known as the β-lactam ring. Class C β-lactamases specifically target cephalosporin antibiotics and deactivate their antimicrobial activity by hydrolyzing the β-lactam ring. | '''Class C β-lactamases''' are a subcategory of β-lactamase enzymes. These enzymes are produced by some bacteria and result in their resistance to a variety of β-lactam antibiotics. β-lactam antibiotics are classified based on their chemical structure which contains a four membered, amide containing ring known as the β-lactam ring. <scene name='69/691534/Class_c_beta-lactamase/1'>Class C β-lactamases</scene><ref>Powers, Rachel, Hollister C. Swanson, Magdalena A. Taracila, Nicholas W. Florek, Chiara Romagnoli, Emilia Caselli, Fabio Prati, Robert A. Bonomo, and Bradley J. Wallar. Biochemical and Structural Analysis of Inhibitors Targeting the ADC-7 Cephalosporinase of Acinetobacter baumannii. Biochemistry, 2014, 53 (48), 7670-7679.</ref> specifically target [http://en.m.wikipedia.org/wiki/Cephalosporin cephalosporin] antibiotics and deactivate their antimicrobial activity by hydrolyzing the [http://en.m.wikipedia.org/wiki/Β-lactam β-lactam ring]. | ||
<Structure load='1ke4' size='400' frame='true' color='white' align='right' caption='Class C Beta-lactamase' scene='69/691534/Class_c_beta-lactamase/1'/> | |||
{| class="wikitable mw-collapsible" border="1" cellpadding="5" cellspacing="0" align="center" style="float: right; border: 1px solid #BBB; margin: .46em 0 0 .2em;" | |||
|+ Class C β-lactamase | |||
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! style="background: #efefef;" colspan="2" |Identifiers | |||
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| [http://en.wikipedia.org/wiki/Enzyme_Commission_number EC number] || [http://www.chem.qmul.ac.uk/iubmb/enzyme/EC3/5/2/8.html 3.5.2.8], [http://www.chem.qmul.ac.uk/iubmb/enzyme/EC3/5/2/6.html 3.5.2.6] | |||
|- | |||
| [http://en.wikipedia.org/wiki/CAS_Registry_Number CAS number] || [http://tools.wmflabs.org/magnustools/cas.php?language=en&cas=9012-26-4&title= 9012-26-4] | |||
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! style="background: #efefef;" colspan="2" |Databases | |||
|- | |||
| [http://en.wikipedia.org/wiki/KEGG KEGG] || [http://www.genome.jp/dbget-bin/www_bget?ec:3.5.2.6 β-lactamases] | |||
|- | |||
! class="mw-collapsible mw-collapsed wikitable" style="background: #efefef;" colspan="2" |Search | |||
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|[http://en.wikipedia.org/wiki/National_Center_for_Biotechnology_Information NCBI] || [http://www.ncbi.nlm.nih.gov/protein?term=3.5.2.6%5BEC/RN%20Number%5D%20AND%20%28cephalosporinase%5BAll%20Fields%5D%20OR%20%22class%20c%20beta%20lactamase%22%5BAll%20Fields%5D%29&cmd=DetailsSearch proteins] | |||
|} | |||
== Function and Mechanism == | == Function and Mechanism == | ||
[[Image:Beta-lactam.jpg|200px|thumb|left|A β-lactam antibiotic (Penicillin)]]Clinically, β-lactam antibiotics, characterized by their central chemical structure, are utilized to combat bacterial infections by targeting penicillin-binding proteins (PBPs), also known as transpeptidases. PBPs are enzymes that are located in the cell membrane and function in cross-linking to form the peptidoglycan layer. PBPs have a deprotonated serine which executes nucleophilic attack on the carbonyl carbon. The PBP is then covalently attached to one unit of peptidoglycan. The amino group of an alanine on a second unit of peptidoglycan then performs a second nucleophilic attack on the carbonyl carbon, resulting in two covalently cross-linked peptidoglycan units and the regeneration of the catalytic PBP.<ref>"Peptidoglycan cell wall." The University of Warwick. n.d. Web. 25 Jan 15</ref> | [[Image:Beta-lactam.jpg|200px|thumb|left|A [http://en.m.wikipedia.org/wiki/Beta-lactam_antibiotic β-lactam antibiotic] ([http://en.m.wikipedia.org/wiki/Penicillin Penicillin])]]Clinically, [http://en.m.wikipedia.org/wiki/Beta-lactam_antibiotic β-lactam antibiotics], characterized by their central chemical structure, are utilized to combat bacterial infections by targeting [http://proteopedia.org/wiki/index.php/Penicillin-binding_protein penicillin-binding proteins] (PBPs), also known as [http://en.m.wikipedia.org/wiki/DD-transpeptidase transpeptidases]. PBPs are enzymes that are located in the cell membrane of bacteria and function in [http://en.wikipedia.org/wiki/Cross-link cross-linking] to form the [http://en.m.wikipedia.org/wiki/Peptidoglycan peptidoglycan] layer. PBPs have a conserved, [http://en.m.wikipedia.org/wiki/Deprotonation deprotonated] serine which executes [http://en.m.wikipedia.org/wiki/Nucleophile nucleophilic] attack on the [http://en.m.wikipedia.org/wiki/Carbonyl carbonyl] carbon. The PBP is then covalently attached to one unit of peptidoglycan. The amino group of an alanine on a second unit of peptidoglycan then performs a second nucleophilic attack on the carbonyl carbon, resulting in two covalently cross-linked peptidoglycan units and the regeneration of the catalytic PBP.<ref>"Peptidoglycan cell wall." The University of Warwick. n.d. Web. 25 Jan 15</ref> | ||
[[Image:Peptidoglycan_cross_linking.png| | [[Image:Peptidoglycan_cross_linking.png|400px|thumb|left|Peptidoglycan with PBP Cross-linking Mechanism]] | ||
The β-lactam ring covalently attaches to PBPs, inhibiting them from executing their role in properly synthesizing the cell wall peptidoglycan layer, via nucleophilic attack of the carbonyl carbon. The β-lactam cannot be removed and thus permanently renders the PBP incapable of its catalytic function in cross-linking. Ultimately, this results in death of bacterial cells from osmotic instability or autolysis.<ref name="MSUDP 2014"> | The β-lactam ring covalently attaches to PBPs, [http://en.m.wikipedia.org/wiki/Enzyme_inhibitor inhibiting] them from executing their role in properly synthesizing the cell wall peptidoglycan layer, via nucleophilic attack of the carbonyl carbon. The β-lactam cannot be removed and thus permanently renders the PBP incapable of its catalytic function in cross-linking. Ultimately, this results in death of bacterial cells from osmotic instability or [http://en.m.wikipedia.org/wiki/Autolysis_(biology) autolysis].<ref name="MSUDP 2014"> | ||
Beta Lactam Antibiotics, 2011. Antimicrobial Resistance Learning Site. Michigan State University Department of Pharmacology. 16 Sept, 2014. | Beta Lactam Antibiotics, 2011. Antimicrobial Resistance Learning Site. Michigan State University Department of Pharmacology. 16 Sept, 2014. | ||
</ref> | </ref> | ||
One of the main causes of resistance to β-lactam drugs is caused by β-lactamases. Chemically, β-lactamases bind to β-lactams the same way β-lactams bind to PBPs. However, the β-lactamases are then able to deactivate the antimicrobial activity of the β-lactams by cleaving the β-lactam bound in the active site through a molecular process called deacylation, rendering it incapable of inhibiting the PBPs and ultimately, allowing cross-linking to occur for adequate cell wall formation. | One of the main causes of [http://en.wikipedia.org/wiki/Antimicrobial_resistance resistance] to β-lactam drugs is caused by β-lactamases. Chemically, β-lactamases bind to β-lactams the same way β-lactams bind to PBPs. However, the β-lactamases are then able to deactivate the antimicrobial activity of the β-lactams by cleaving the β-lactam bound in the <scene name='69/691534/Class_c_beta-lactamase_as/2'>active site</scene><ref>Powers, Rachel, Hollister C. Swanson, Magdalena A. Taracila, Nicholas W. Florek, Chiara Romagnoli, Emilia Caselli, Fabio Prati, Robert A. Bonomo, and Bradley J. Wallar. Biochemical and Structural Analysis of Inhibitors Targeting the ADC-7 Cephalosporinase of Acinetobacter baumannii. Biochemistry, 2014, 53 (48), 7670-7679.</ref> through a molecular process called [http://en.m.wikipedia.org/wiki/Acetylation deacylation], rendering it incapable of inhibiting the PBPs and ultimately, allowing cross-linking to occur for adequate cell wall formation. | ||
[[Image:Beta-lactam inhibition.png|500px|thumb|center|Image showing mechanism performed by β-lactam antibiotic within PBP [http://en.m.wikipedia.org/wiki/Active_site active site].]] | |||
== Class C Mechanism == | == Class C Mechanism == | ||
There are four main classes of β-lactamase enzymes, A, B, C, and D. While these main classes all disable the antimicrobial activity of β-lactams by breaking open the β-lactam ring at the amide bond, each class has individually conserved residues that allow the enzyme to maintain catalytic function. Classes A, C and D are most similar by functioning via catalytic serine, while class B functions via catalytic zinc.<ref name="Bush 2013"> | There are four main classes of β-lactamase enzymes, A, B, C, and D. While these main classes all disable the antimicrobial activity of β-lactams by breaking open the β-lactam ring at the amide bond, each class has individually conserved [http://en.m.wikipedia.org/wiki/Amino_acid residues] that allow the enzyme to maintain catalytic function. Classes A, C and D are most similar by functioning via catalytic serine, while class B functions via catalytic zinc.<ref name="Bush 2013"> | ||
Bush, Karen. The ABCD’s of β-lactamase nomenclature. J Infect chemother. (2013) 19, 549-559.</ref> | Bush, Karen. The ABCD’s of β-lactamase nomenclature. J Infect chemother. (2013) 19, 549-559.</ref> | ||
Class C β-lactamases share a very similar mechanism as the Class A β- | Class C β-lactamases share a very similar mechanism as the Class A β-lactamases, acylation followed by hydrolytic deacylation.4 Class C differs from A in that the hydrolytic water, activated by tyrosine 150, approaches the enzyme from the opposite side. This activated water is what allows β-lactamases to deacylation and maintain their catalytic function, while PBPs cannot.<ref name="Bush 2013" /> Class D differs from A and C in that it has an N-carboxylated active site lysine which hydrogen bonds with the active site serine.<ref>Mobashery, Shahriar. Bacterial Resistance to β-Lactam Antibiotics: Compelling Opportunism, Compelling Opportunity. Chem. Rev. (2005) 105, 395-424.</ref> | ||
Class C β-lactamases functions as a monomer and among many other enzyme types, contains a structural component known as an [http://en.m.wikipedia.org/wiki/Oxyanion_hole oxyanion hole]. This pocket of [http://en.m.wikipedia.org/wiki/Hydrophile hydrophilic] residues directly stabilizes the high-energy [http://en.m.wikipedia.org/wiki/Tetrahedral_carbonyl_addition_compound tetrahedral intermediate], lowering the [http://en.m.wikipedia.org/wiki/Activation_energy activation energy] and promoting a faster overall reaction.<ref>Albert Lehninger et al. (2008). Principles of Biochemistry (5th ed.). Macmillan. p. 207.</ref><ref>Livermore, David. β-Lactamase mediated resistance and opportunities for its control. J. Antimicrob. Chemother. (1998) 41 (suppl 4): 25-41.</ref> The hydrophobicity of ADC-1, a class C β-lactamase, is shown <scene name='69/691534/Hydrophobicity_in_adc-1/1'>here</scene><ref>Bhattacharya, M., Toth, M., Antunes, N.T., Smith, C.A., Vakulenko, S.B. Structure of the extended-spectrum class C β-lactamase ADC-1 from Acinetobacter baumannii. Acta Crystallogr. (2014),Sect.D 70: 760-771</ref>. In the structure, red regions denote charged residues, while purple represent hydrophillic residues and grey, hydrophobic. | |||
[[Image:Beta lactamase mechaism.jpg|1000px|thumb|center|Class C β-lactamase general mechanism, showing covalently bound β-lactam antibiotic in intermidiate state.]] | [[Image:Beta lactamase mechaism.jpg|1000px|thumb|center|Class C β-lactamase general mechanism, showing covalently bound β-lactam antibiotic in intermidiate state.]] | ||
Class C β-lactamases, | == Class C Inhibition == | ||
With the mechanistic knowledge of β-lactamases, there are two apparent options for clinical treatment of β-lactam resistant bacteria. Scientists could either (a) design an entirely new class of antibiotic that are not reliant on the chemical structure of the β-lactam ring, or (b) use the current arsenal of antibiotics in combination with an inhibitor that will deactivate the β-lactamase. A β-lactamase inhibitor is a compound that could form a tight complex to the active site of the enzyme and causes the β-lactamase to be unable to bind and inactivate another antibiotic molecule.<ref>Powers, Rachel, Hollister C. Swanson, Magdalena A. Taracila, Nicholas W. Florek, Chiara Romagnoli, Emilia Caselli, Fabio Prati, Robert A. Bonomo, and Bradley J. Wallar. Biochemical and Structural Analysis of Inhibitors Targeting the ADC-7 Cephalosporinase of Acinetobacter baumannii. Biochemistry, 2014, 53 (48), 7670-7679.</ref> This is the active site of AmpC bound with a | |||
<scene name='69/691534/Ampc_in_complex_with_inhibitor/1'>boronic acid transition state inhibitor</scene><ref>Powers, R.A., Shoichet, B.K. Structure-based approach for binding site identification on AmpC beta-lactamase. J.Med.Chem. (2002) 45: 3222-3234</ref>. | |||
== Clinical Significance == | == Clinical Significance == | ||
Since the discovery of penicillin in the late 1920s, β-lactam antibiotics, characterized by their central chemical structure, the β-lactam ring, have played an important role in human health. Unfortunately, extensive use, and often misuse, of such drugs has led to an increased resistance in many species of bacterium resulting in major clinical treatment dilemmas. Each year in the United States alone, a minimum of 2 million people are infected with drug-resistant bacteria and of those 2 million, at least 23,000 infections result in fatality.<ref>Antibiotic Resistant Threat Report in the United States, 2013. Centers for Disease Control and Prevention. 16 September, 2013.</ref> Fortunately, fiscal year funding for antibiotic resistance research from the U.S. government has nearly to $1.2 billion, providing a more optimistic outlook for this serious issue in clinical treatment.<ref>ASM Statement on the President’s Proposed 2016 Budget to Combat Antibiotic-resistant Bacteria. American Society for Microbiology. 28 Jan 2015. Web. 22 Feb 2015.</ref> | Since the discovery of [http://en.m.wikipedia.org/wiki/Penicillin penicillin] in the late 1920s by [http://en.m.wikipedia.org/wiki/Alexander_Flemming Alexander Flemming]<ref>American Chemical Society International Historic Chemical Landmarks. Discovery and Development of Penicillin. http://www.acs.org/content/acs/en/education/whatischemistry/landmarks/flemingpenicillin.html (accessed Feb 26, 2015).</ref> β-lactam antibiotics, characterized by their central chemical structure, the β-lactam ring, have played an important role in human health. Unfortunately, extensive use, and often misuse, of such drugs has led to an increased [http://en.m.wikipedia.org/wiki/Antimicrobial_resistance antibiotic resistance] in many species of bacterium resulting in major clinical treatment dilemmas. Each year in the United States alone, a minimum of 2 million people are infected with drug-resistant bacteria and of those 2 million, at least 23,000 infections result in fatality.<ref>Antibiotic Resistant Threat Report in the United States, 2013. Centers for Disease Control and Prevention. 16 September, 2013.</ref> Fortunately, fiscal year funding for antibiotic resistance research from the U.S. government has nearly to $1.2 billion, providing a more optimistic outlook for this serious issue in clinical treatment.<ref>ASM Statement on the President’s Proposed 2016 Budget to Combat Antibiotic-resistant Bacteria. American Society for Microbiology. 28 Jan 2015. Web. 22 Feb 2015.</ref> | ||
==References== | ==References== | ||
<references/> | <references/> |