2pd0: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(10 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2pd0.gif|left|200px]]


{{Structure
==Protein cgd2_2020 from Cryptosporidium parvum==
|PDB= 2pd0 |SIZE=350|CAPTION= <scene name='initialview01'>2pd0</scene>, resolution 2.30&Aring;
<StructureSection load='2pd0' size='340' side='right'caption='[[2pd0]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
|SITE=  
== Structural highlights ==
|LIGAND= <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID'>MES</scene>
<table><tr><td colspan='2'>[[2pd0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Crypv Crypv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PD0 FirstGlance]. <br>
|ACTIVITY=  
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr>
|GENE= XP_626409 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5807 Cryptosporidium parvum])
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
}}
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">XP_626409 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5807 CRYPV])</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pd0 OCA], [https://pdbe.org/2pd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pd0 RCSB], [https://www.ebi.ac.uk/pdbsum/2pd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pd0 ProSAT]</span></td></tr>
'''Protein cgd2_2020 from Cryptosporidium parvum'''
</table>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
==About this Structure==
Check<jmol>
2PD0 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cryptosporidium_parvum Cryptosporidium parvum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD0 OCA].  
  <jmolCheckbox>
[[Category: Cryptosporidium parvum]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pd0_consurf.spt"</scriptWhenChecked>
[[Category: Single protein]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Arrowsmith, C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Artz, J.]]
  </jmolCheckbox>
[[Category: Bochkarev, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pd0 ConSurf].
[[Category: Chruszcz, M.]]
<div style="clear:both"></div>
[[Category: Cymborowski, M.]]
__TOC__
[[Category: Edwards, A.]]
</StructureSection>
[[Category: Hills, T.]]
[[Category: Crypv]]
[[Category: Hui, R.]]
[[Category: Large Structures]]
[[Category: Lew, J.]]
[[Category: Arrowsmith, C]]
[[Category: Melone, M.]]
[[Category: Artz, J]]
[[Category: Minor, W.]]
[[Category: Bochkarev, A]]
[[Category: SGC, Structural Genomics Consortium.]]
[[Category: Chruszcz, M]]
[[Category: Sundstrom, M.]]
[[Category: Cymborowski, M]]
[[Category: Weigelt, J.]]
[[Category: Edwards, A]]
[[Category: Wernimont, A.]]
[[Category: Hills, T]]
[[Category: Zhao, Y.]]
[[Category: Hui, R]]
[[Category: MES]]
[[Category: Lew, J]]
[[Category: sgc]]
[[Category: Melone, M]]
[[Category: structural genomic]]
[[Category: Minor, W]]
[[Category: structural genomics consortium]]
[[Category: Structural genomic]]
 
[[Category: Sundstrom, M]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:11:38 2008''
[[Category: Weigelt, J]]
[[Category: Wernimont, A]]
[[Category: Zhao, Y]]
[[Category: Sgc]]
[[Category: Unknown function]]

Latest revision as of 18:21, 17 June 2021

Protein cgd2_2020 from Cryptosporidium parvumProtein cgd2_2020 from Cryptosporidium parvum

Structural highlights

2pd0 is a 4 chain structure with sequence from Crypv. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Gene:XP_626409 (CRYPV)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2pd0, resolution 2.30Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA