2pd1: Difference between revisions

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-[[Image:2pd1.jpg|left|200px]]
- {{Structure
+==Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea==
-|PDB= 2pd1 |SIZE=350|CAPTION= <scene name='initialview01'>2pd1</scene>, resolution 1.86&Aring;
+<StructureSection load='2pd1' size='340' side='right'caption='[[2pd1]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=ACT:ACETATE ION'>ACT</scene>
+<table><tr><td colspan='2'>[[2pd1]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PD1 FirstGlance]. <br>
-|ACTIVITY=
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-|GENE= NE2512 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=915 Nitrosomonas europaea])
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pd1 OCA], [https://pdbe.org/2pd1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pd1 RCSB], [https://www.ebi.ac.uk/pdbsum/2pd1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pd1 ProSAT], [https://www.topsan.org/Proteins/MCSG/2pd1 TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of NE2512 protein of unknown function from Nitrosomonas europaea'''
+== Function ==
+[https://www.uniprot.org/uniprot/Q82S47_NITEU Q82S47_NITEU]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-PD1 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea Nitrosomonas europaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PD1 OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pd1_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pd1 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Nitrosomonas europaea]]
-[[Category: Single protein]]
+[[Category: Edwards A]]
-[[Category: Edwards, A.]]
+[[Category: Evdokimova E]]
-[[Category: Evdokimova, E.]]
+[[Category: Joachimiak A]]
-[[Category: Joachimiak, A.]]
+[[Category: Kagan O]]
-[[Category: Kagan, O.]]
+[[Category: Osipiuk J]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Savchenko A]]
-[[Category: Osipiuk, J.]]
-[[Category: Savchenko, A.]]
-[[Category: ACT]]
-[[Category: apc7253]]
-[[Category: mcsg]]
-[[Category: midwest center for structural genomic]]
-[[Category: ne2512 protein]]
-[[Category: protein structure initiative]]
-[[Category: psi-2]]
-[[Category: structural genomic]]
-[[Category: unknown function]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:11:39 2008''