2p9y: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2p9y.jpg|left|200px]]
- {{Structure
+==Crystal structure of TTHB049 from Thermus thermophilus HB8==
-|PDB= 2p9y |SIZE=350|CAPTION= <scene name='initialview01'>2p9y</scene>, resolution 1.85&Aring;
+<StructureSection load='2p9y' size='340' side='right'caption='[[2p9y]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-|SITE=
+== Structural highlights ==
-|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
-|ACTIVITY= [http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-|GENE=
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-}}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [https://pdbe.org/2p9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [https://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
+</table>
-'''Crystal structure of TTHB049 from Thermus thermophilus HB8'''
+== Function ==
+[https://www.uniprot.org/uniprot/Q53WB3_THET8 Q53WB3_THET8]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-P9Y is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA].
+Check<jmol>
-[[Category: Alpha-ribazole phosphatase]]
+  <jmolCheckbox>
-[[Category: Single protein]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9y_consurf.spt"</scriptWhenChecked>
-[[Category: Thermus thermophilus]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Kageyama, Y.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Kunishima, N.]]
+  </jmolCheckbox>
-[[Category: Matsuura, Y.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9y ConSurf].
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+<div style="clear:both"></div>
-[[Category: Shimada, H.]]
+__TOC__
-[[Category: Sugahara, M.]]
+</StructureSection>
-[[Category: GOL]]
+[[Category: Large Structures]]
-[[Category: NA]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: hydrolase]]
+[[Category: Kageyama Y]]
-[[Category: national project on protein structural and functional analyse]]
+[[Category: Kunishima N]]
-[[Category: nppsfa]]
+[[Category: Matsuura Y]]
-[[Category: riken structural genomics/proteomics initiative]]
+[[Category: Shimada H]]
-[[Category: rsgi]]
+[[Category: Sugahara M]]
-[[Category: structural genomic]]
-[[Category: thermus thermophilus hb8]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:10:38 2008''